Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48655 128 / 5e-37 RING/U-box superfamily protein (.1.2.3) AT3G07200 105 / 1e-28 RING/U-box superfamily protein (.1.2) AT5G05130 49 / 7e-07 DNA/RNA helicase protein (.1) AT2G32950 47 / 3e-06 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G18660 47 / 4e-06 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT4G21070 46 / 7e-06 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT3G07120 44 / 3e-05 RING/U-box superfamily protein (.1) AT4G03510 44 / 3e-05 ATRMA1, RMA1 RING membrane-anchor 1 (.1.2) AT2G26350 44 / 5e-05 PEX10, ATPEX10 peroxin 10 (.1) AT1G74990 42 / 7e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022569 [exp] 80 / 2e-18 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10018271 [exp] 50 / 5e-08 AT3G07200 51 / 2e-08 RING/U-box superfamily protein (.1.2) Lus10040641 [exp] 48 / 6e-07 AT3G07200 46 / 1e-06 RING/U-box superfamily protein (.1.2) Lus10039001 [exp] 48 / 2e-06 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10043365 [exp] 47 / 6e-06 AT5G22750 1445 / 0.0 DNA/RNA helicase protein (.1) Lus10029990 [exp] 46 / 1e-05 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10035332 [exp] 45 / 1e-05 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10022324 [exp] 45 / 1e-05 AT3G27330 251 / 4e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10020007 [exp] 45 / 1e-05 AT2G26350 449 / 2e-158 peroxin 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G191400 [exp] 160 / 2e-49 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.002G245500 [exp] 147 / 4e-44 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3) Potri.001G082200 [exp] 80 / 3e-18 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.003G148300 [exp] 78 / 2e-17 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3) Potri.006G035700 [exp] 50 / 3e-07 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1) Potri.006G122800 [exp] 48 / 2e-06 AT5G03450 473 / 6e-160 Transducin/WD40 repeat-like superfamily protein (.1) Potri.016G033800 [exp] 47 / 4e-06 AT5G05130 650 / 0.0 DNA/RNA helicase protein (.1) Potri.014G159300 [exp] 47 / 6e-06 AT2G32950 1091 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G222000 [exp] 45 / 1e-05 AT2G26350 519 / 0.0 peroxin 10 (.1) Potri.012G068100 [exp] 45 / 2e-05 AT1G18660 679 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022774 pacid=23160043 polypeptide=Lus10022774 locus=Lus10022774.g ID=Lus10022774.BGIv1.0 annot-version=v1.0 ATGAGCACTCAGGCTCAGGGCGGAAGAGGGGTTCCCTTGAGGTATCGGAGGAGAAAGCCGGTGCTGGACTTGAACGAGGTGCCGAGTGAGGTTCGTGATC AGCAGGGAACTTCAGACCAAGCTGCAATGGGCAATGTCCAAGTTGGCCAACCAGTGGTTTCTGTAGCTCCGATCATTGATGTGGAGGAGCTTGAAGATGA TGTTATTGAATCCTCGCCAAGGGCTTTTGCTGAAGCCAAGAACAATGCTCGCCGAACTCGAGTCAGGACTCTTCCTTTACTTGATGTGGCATCAGGTGAA GTGACTGCAGGGTTGACAGTACCAGAGGCACCTTTTGTCCGAAACAAGCGTAATAGACGAGTACCAGACAACTGTCATGTAATAAACTTGGAAAGCAGCG GTGGCTTCACGCCACCTGTAGCGCCTCCACCACCACCTCCTCCTCCACCTCCAGAACCGATCTTTAATTGTCCAATCTGTATGGCTCCATTCGTTGAAGA GACATCAACTAAATGTGGACATATCTTCTGTAAGAAGTGTATCAAGGATGCACTAGCTTTTCGTGCCAAATGCCCTACTTGTAGGAAAAAAGTTACTCCT AGGGAACTTATTAGGGTGTTCCTTCCATCAACCGGGTGA
AA sequence Show only first row Show all	>Lus10022774 pacid=23160043 polypeptide=Lus10022774 locus=Lus10022774.g ID=Lus10022774.BGIv1.0 annot-version=v1.0 MSTQAQGGRGVPLRYRRRKPVLDLNEVPSEVRDQQGTSDQAAMGNVQVGQPVVSVAPIIDVEELEDDVIESSPRAFAEAKNNARRTRVRTLPLLDVASGE VTAGLTVPEAPFVRNKRNRRVPDNCHVINLESSGGFTPPVAPPPPPPPPPPEPIFNCPICMAPFVEETSTKCGHIFCKKCIKDALAFRAKCPTCRKKVTP RELIRVFLPSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	0	1
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	2.0	0.9477
					Lus10001533 [exp]	5.1	0.9361
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	6.2	0.9296
					Lus10022773 [exp]	6.9	0.9200
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	7.5	0.9270
AT4G16600			Nucleotide-diphospho-sugar tra...		Lus10004717 [exp]	7.7	0.9160
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	7.7	0.9232
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	8.8	0.9161
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10023303 [exp]	9.0	0.9199
AT3G07970		QRT2	QUARTET 2, Pectin lyase-like s...		Lus10042371 [exp]	9.5	0.9247

Compare expression of checked genes

Lus10022774 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.