Plant FIBer expression Database

Lus10022775 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G25100 832 / 0 CDC45 cell division cycle 45 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011840
[exp]
1076 / 0 AT3G25100 894 / 0.0 cell division cycle 45 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G090600
[exp]
918 / 0 AT3G25100 918 / 0.0 cell division cycle 45 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02724 CDC45 CDC45-like protein
Representative CDS sequence
>Lus10022775 pacid=23159948 polypeptide=Lus10022775 locus=Lus10022775.g ID=Lus10022775.BGIv1.0 annot-version=v1.0
ATGGTGAGGGAGCAAAAAGTGGAGTCATTCTACGCTCGCCTTCGTGAGTCAGTCTCAGCTTCATCGTACTCTCCACTGCTCATATTCCCGTCAACATCAG
ATGTGGATTCACTCTGTGCACTCAAGATAATCTTCAACGTTCTGGAATCCGATTCGGTCCGGTACGCTTGCTATCCTGTCTCTTCATTCCAAGAGATCCA
CAAGTACGCCGGCGAGGATGTGACTTCCTCCTCGTCCTCCTCAAACCCCATTTCTATCCTATTAGTGAACTGGGGATGCCAGAGGGATTTGAGGAGGCTG
CTCCAGTTGGGCCCCGGGGTTCGTGTTTTCGTCGTGGATAGTCACCGTCCTATCCATTTGCACAACTTGAATGAGCAGAATCAGAACGTTGTGGTGCTCT
ATACTAGGGAGGATGAGAGGCAAGCTGATTTAGCTTATGATTTCTCTGATGCTGCTCATGATTTCGATGTTTCTGCTCTGGCAAATGCTGGTGATTTGAA
TAGCGATGATGAAGGAGATGATGATGAGAGTTCTGATAGTGATAAGGACAGTGACAGCGATGGTGATGATGATGATGATGATGATGGAGAAGATGGAAGG
ACAGGGAAGAGAAGAAAGGTTTCGAAAGATGATGGAAATGACCCGGTTCAGCTGTATAAGAAGCTGAAGAGGGAGTATTACAGTATGGGAACTTTCCATG
GGAAGCCATCTGGGTGTTTGATGTATGAACTGTCGCATTCATTGAGGAAGAACACGAACGAGCTGCTTTGGTTGGCTTGCGTTTCGTTAACTGATCAGTT
CGTCCACGAGAGATTGACAGATGAGAGGTACCAAGCCGGGGTAATGGAACTTGAACAGCACATCAACAGTCTAGGCAATCTGGAGGCAGTTAGTTCAGTT
ACACTGAAAGATGGAACGAAAATCCGAGCACCGGAGGCATCACGAATTTCGTACGAGGACGAACCAAGGCTGATGCTTTTGAGGGAGTGGAACCTGTTTG
ATTCGATGCTGTGCTCTTCCTACATTGCTCCGAAGCTCAAGACATGGAGCGACAACGGTATGAAGAAGCTCAAGCTTCTCCTAGCCAGGATGGGGTTTGC
ATTAGTCGACTGCCAGCAGAAGTTCCAGTACATGAACCTGGAAGTCAAAAGAAAGATGAAAGACGAATTCGACCGGTTCCTACCGGAGTACGGTCTAACC
GAATTCTACTACAGAAGCTTCCTCAGACTCCATGGTTACAGCTCCAGAGTCTCGGCGGCTGATGTAGTCTACGGAGTTACAGCATTGCTGGAATCATTCG
TCAACTCTGACGGATCCTGTGCATCGAAGCAATTCGGAGAGGCTTACGACGCCCTTTCGTTAAACAATCTCGACAAGTTACGAGACGGAATGCAGAAGGC
TATTAAAGTGCAGAGAGCAATTCTAAAGCAAGGAAGCGGATCCATAACCAGGAGCGGTTGTGTGAGAAGCGGTAGGAAGTTCAGGTGGGTGAAACTGGAG
GACTCTGTGGATAGTCAACTGCTGGGATACCCACAAGCATTGACTAAATTTTGTTACTTTCTGATGGATGCGCTGAGGGAGAAGGGTGCGAGGCCGAAGC
CGTTGATATGCGCTTGCCTTTCGCCGGATGTAGAGAAGATGCTGATCGTTGGTGTCTGCGGGAAGCCTAGACTGGGAGCTTTGAAAGGGAATGCGTTTGG
TGCGGCGTTCAGGAATGCTGCAGAGGAGATTGGAGCTGTGTATTTCCATGAGTTGTTTGAGTCTTCTTGGATTGTTTTGGAGAAGAGGAGGGTTAATGAC
TTCATGATCAAAATAACTGAGAAGCTCTGA
AA sequence
>Lus10022775 pacid=23159948 polypeptide=Lus10022775 locus=Lus10022775.g ID=Lus10022775.BGIv1.0 annot-version=v1.0
MVREQKVESFYARLRESVSASSYSPLLIFPSTSDVDSLCALKIIFNVLESDSVRYACYPVSSFQEIHKYAGEDVTSSSSSSNPISILLVNWGCQRDLRRL
LQLGPGVRVFVVDSHRPIHLHNLNEQNQNVVVLYTREDERQADLAYDFSDAAHDFDVSALANAGDLNSDDEGDDDESSDSDKDSDSDGDDDDDDDGEDGR
TGKRRKVSKDDGNDPVQLYKKLKREYYSMGTFHGKPSGCLMYELSHSLRKNTNELLWLACVSLTDQFVHERLTDERYQAGVMELEQHINSLGNLEAVSSV
TLKDGTKIRAPEASRISYEDEPRLMLLREWNLFDSMLCSSYIAPKLKTWSDNGMKKLKLLLARMGFALVDCQQKFQYMNLEVKRKMKDEFDRFLPEYGLT
EFYYRSFLRLHGYSSRVSAADVVYGVTALLESFVNSDGSCASKQFGEAYDALSLNNLDKLRDGMQKAIKVQRAILKQGSGSITRSGCVRSGRKFRWVKLE
DSVDSQLLGYPQALTKFCYFLMDALREKGARPKPLICACLSPDVEKMLIVGVCGKPRLGALKGNAFGAAFRNAAEEIGAVYFHELFESSWIVLEKRRVND
FMIKITEKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G25100 CDC45 cell division cycle 45 (.1) Lus10022775
[exp]
0 1
AT5G08020 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA... Lus10040517
[exp]
2.6 0.9677
AT3G25100 CDC45 cell division cycle 45 (.1) Lus10011840
[exp]
3.9 0.9617
AT5G08020 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA... Lus10021153
[exp]
5.1 0.9622
AT5G46740 UBP21 ubiquitin-specific protease 21... Lus10043126
[exp]
8.5 0.9503
AT5G46280 MCM3 MINICHROMOSOME MAINTENANCE 3, ... Lus10025389
[exp]
10.0 0.9539
AT2G07690 MCM5 MINICHROMOSOME MAINTENANCE 5, ... Lus10040017
[exp]
10.2 0.9523
AT3G61740 SDG14, ATX3 SET domain protein 14 (.1.2) Lus10030262
[exp]
12.4 0.9479
AT3G42660 transducin family protein / WD... Lus10021720
[exp]
13.0 0.9481
AT4G02070 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS... Lus10010010
[exp]
13.5 0.9492
AT4G02110 transcription coactivators (.1... Lus10010017
[exp]
14.7 0.9422

Lus10022775 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.