Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25070 140 / 6e-41 RIN4 RPM1 interacting protein 4 (.1) AT5G55850 51 / 3e-08 NOI RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) AT5G48657 51 / 1e-07 defense protein-related (.1.2) AT2G17660 47 / 2e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT2G04410 47 / 3e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G63270 47 / 4e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT3G48450 47 / 8e-07 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G40645 45 / 2e-06 RPM1-interacting protein 4 (RIN4) family protein (.1) AT4G35655 44 / 4e-06 RPM1-interacting protein 4 (RIN4) family protein (.1) AT5G48500 40 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011841 [exp] 410 / 6e-144 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10022524 [exp] 49 / 6e-08 AT2G04410 104 / 2e-31 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10014574 [exp] 49 / 9e-08 AT5G55850 76 / 1e-19 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10016623 [exp] 49 / 1e-07 AT2G04410 105 / 1e-31 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10032112 [exp] 49 / 1e-07 AT5G55850 80 / 1e-20 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10036939 [exp] 47 / 5e-07 AT3G25070 52 / 7e-10 RPM1 interacting protein 4 (.1) Lus10006250 [exp] 48 / 6e-07 AT5G55850 52 / 7e-10 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Lus10025949 [exp] 46 / 8e-07 AT2G17660 87 / 2e-24 RPM1-interacting protein 4 (RIN4) family protein (.1) Lus10012316 [exp] 45 / 2e-06 AT5G55850 87 / 4e-24 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245400 [exp] 270 / 2e-91 AT3G25070 169 / 3e-52 RPM1 interacting protein 4 (.1) Potri.004G002500 [exp] 70 / 3e-14 AT3G25070 75 / 1e-16 RPM1 interacting protein 4 (.1) Potri.011G022000 [exp] 67 / 5e-13 AT3G25070 74 / 6e-16 RPM1 interacting protein 4 (.1) Potri.001G338500 [exp] 52 / 5e-09 AT5G40645 82 / 1e-22 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.015G089201 [exp] 51 / 1e-08 AT2G04410 90 / 1e-25 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.012G092601 [exp] 51 / 3e-08 AT2G04410 78 / 3e-20 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.001G368900 [exp] 49 / 8e-08 AT5G55850 124 / 4e-39 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Potri.011G094200 [exp] 50 / 1e-07 AT5G55850 123 / 8e-38 RPM1-interacting protein 4 (RIN4) family protein (.1), RPM1-interacting protein 4 (RIN4) family protein (.2), RPM1-interacting protein 4 (RIN4) family protein (.3) Potri.014G168900 [exp] 48 / 1e-07 AT2G04410 102 / 1e-30 RPM1-interacting protein 4 (RIN4) family protein (.1) Potri.015G040500 [exp] 38 / 0.0007 AT5G18310 59 / 2e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05627 [flax] [poplar] AvrRpt-cleavage Cleavage site for pathogenic type III effector avirulence factor Avr
Representative CDS sequence Show only first row Show all	>Lus10022776 pacid=23160028 polypeptide=Lus10022776 locus=Lus10022776.g ID=Lus10022776.BGIv1.0 annot-version=v1.0 ATGGCACAGCAGCAGCAGCGTTCACATGTTCCCAAGTTTGGCAACTGGGAAAGCGACGACAATGTTCCTTACACACAATATTTCGACAAAGCCAGGAAGG GCCGCACCGGTGGTAAGATGATAAACCCGAACGATCCAATGGAGAACCCGGATCTGCTTGTCGAACAGACTCCTAAGGTCAGAGTCGAATCGGAGGAACC ACCTGCTGCTGGGCAGGTCAATGTTCGAAAAGCACATGAGCGCAGAAGGAGCAGGGAAGACATCGAATTCAAGCAGCCTATGGGATCTCCCGCACGCACT GAGAATGCAAATCGCAGAGCTGGTTCAGGAGGAGGGCGTGGTGGGAGTGGAGCAGGTAGCCGCCCCGCACGAATCAGCGGTGGTTCTGACAACAGCTTCG AGAAGTCTCCACTCCACCCACACGCCAGGGTCTCGGGCCGGGGAAGTGGGGCCCCCTCTCCTGTCTGGGAAGGGAAGAGCTCTCAGGAGAATAGCCACAG CACTCCTGGAAGGTCCAGGATGAGACCAAAAGGCGACGAAAGTCCTGATCAGAGCTCGGCTGTGCCGAAATTCGGTGATTGGGACGAGAACAACCCTGCA TCTGCAGATGGATACACTCACATCTTCAACAAGGTGAGGGAAGAGAGACTCGGTGGCGGAGCGGCAGGGAGGTCTCCTGGAGGATCGTATGGCGACTCGT CCTATGGCAATGCTCGGAAGCACAAATCAGGGACAACCTCCATGAATTGCTGCTTTCCATGGGGACGAAAATGA
AA sequence Show only first row Show all	>Lus10022776 pacid=23160028 polypeptide=Lus10022776 locus=Lus10022776.g ID=Lus10022776.BGIv1.0 annot-version=v1.0 MAQQQQRSHVPKFGNWESDDNVPYTQYFDKARKGRTGGKMINPNDPMENPDLLVEQTPKVRVESEEPPAAGQVNVRKAHERRRSREDIEFKQPMGSPART ENANRRAGSGGGRGGSGAGSRPARISGGSDNSFEKSPLHPHARVSGRGSGAPSPVWEGKSSQENSHSTPGRSRMRPKGDESPDQSSAVPKFGDWDENNPA SADGYTHIFNKVREERLGGGAAGRSPGGSYGDSSYGNARKHKSGTTSMNCCFPWGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10022776 [exp]	0	1
AT5G18900			2-oxoglutarate (2OG) and Fe(II...		Lus10016271 [exp]	1.7	0.8580
AT1G11360			Adenine nucleotide alpha hydro...		Lus10018515 [exp]	2.0	0.8530
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10033184 [exp]	8.7	0.8486
AT3G52560		MMZ4 ,UEV1D ,UE...	MMS2 ZWEI HOMOLOGUE 4, ubiquit...		Lus10029415 [exp]	10.5	0.8259
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10032963 [exp]	11.0	0.8416
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	11.5	0.8514
AT1G03610			Protein of unknown function (D...		Lus10039803 [exp]	12.0	0.8180
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	12.0	0.8241
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	14.4	0.7591
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	15.0	0.8081

Compare expression of checked genes

Lus10022776 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.