Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07190 204 / 1e-66 B-cell receptor-associated protein 31-like (.1) AT5G48660 203 / 3e-66 B-cell receptor-associated protein 31-like (.1) AT5G42570 103 / 5e-27 B-cell receptor-associated 31-like (.1) AT1G11905 75 / 3e-16 B-cell receptor-associated protein 31-like (.1.2) AT3G20450 65 / 2e-13 B-cell receptor-associated protein 31-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011842 [exp] 284 / 6e-98 AT5G48660 270 / 1e-92 B-cell receptor-associated protein 31-like (.1) Lus10038188 [exp] 229 / 2e-76 AT3G07190 265 / 1e-90 B-cell receptor-associated protein 31-like (.1) Lus10031546 [exp] 108 / 3e-29 AT5G42570 287 / 3e-99 B-cell receptor-associated 31-like (.1) Lus10030043 [exp] 101 / 1e-26 AT5G42570 241 / 1e-81 B-cell receptor-associated 31-like (.1) Lus10035283 [exp] 92 / 5e-23 AT5G42570 244 / 9e-83 B-cell receptor-associated 31-like (.1) Lus10015132 [exp] 87 / 8e-21 AT5G42570 258 / 7e-88 B-cell receptor-associated 31-like (.1) Lus10020025 [exp] 87 / 1e-20 AT1G11905 225 / 9e-75 B-cell receptor-associated protein 31-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G191500 [exp] 207 / 6e-68 AT5G48660 237 / 2e-79 B-cell receptor-associated protein 31-like (.1) Potri.002G245300 [exp] 205 / 9e-67 AT3G07190 239 / 3e-80 B-cell receptor-associated protein 31-like (.1) Potri.004G007900 [exp] 107 / 1e-28 AT5G42570 259 / 3e-88 B-cell receptor-associated 31-like (.1) Potri.011G007200 [exp] 102 / 8e-27 AT5G42570 278 / 1e-95 B-cell receptor-associated 31-like (.1) Potri.014G154800 [exp] 92 / 1e-22 AT5G42570 152 / 2e-46 B-cell receptor-associated 31-like (.1) Potri.011G089100 [exp] 78 / 3e-18 AT5G42570 140 / 5e-43 B-cell receptor-associated 31-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05529 [flax] [poplar] Bap31 Bap31/Bap29 transmembrane region
Representative CDS sequence Show only first row Show all	>Lus10022777 pacid=23159972 polypeptide=Lus10022777 locus=Lus10022777.g ID=Lus10022777.BGIv1.0 annot-version=v1.0 ATGATCGAGCTGCTGTTCTGCGTTATGTTTGCGGAAGCAGGGATAGCGTTCTTGCTGCTGGTGAAAATCGGCCCGTTGAGGGAGCTGGTGCTCAAGAGCT TGGATCAGATCAAGATCGGGAAAGGGCCAGCTTACGTGAAGACGATTGCTGGTACTATGTTCGTGATTCTGTTGTCTTACCTTATGAGCATTGTCAAGAT CCAAAATAAAGGGGCGAAGCTTGGGAGTTTGTCGCCTATGGACCAGGTTCTTTGGAGGAGTCATCTGCTTGAGGCTTTGCTCATTGGTTTCACATTGTTT CTCGGGTTCATAATCGACCGCATGCACCACTATCTCGAAAAGCTCATCAGTCTGAAAGCCAACACGGGTTCATCAAAGGAAGAGTTCGAGATGCTCCAGA AGGAGAACGAGCAGCTGAAGGAAAAGGAAGAGAAAGCTTCCAAGGAAAACAAGCAGCTTCAGGACAAAATCTCAGCTCTGTCAGAAGAGTTGAAGAAGCT GAAGATGGAAGCTGAAGAAAAGGATAAGAAGGTTGAAACTGCAGAAGCCCATGTCACTTCCCTTCAGAAACAGTCTGCCGATCTATTGCTCGAATACGAC CGGCTGCTCGAAGACAACCAGAACCTCCAGGCTCATGCTCAAGGGTTTAGAAGTTGA
AA sequence Show only first row Show all	>Lus10022777 pacid=23159972 polypeptide=Lus10022777 locus=Lus10022777.g ID=Lus10022777.BGIv1.0 annot-version=v1.0 MIELLFCVMFAEAGIAFLLLVKIGPLRELVLKSLDQIKIGKGPAYVKTIAGTMFVILLSYLMSIVKIQNKGAKLGSLSPMDQVLWRSHLLEALLIGFTLF LGFIIDRMHHYLEKLISLKANTGSSKEEFEMLQKENEQLKEKEEKASKENKQLQDKISALSEELKKLKMEAEEKDKKVETAEAHVTSLQKQSADLLLEYD RLLEDNQNLQAHAQGFRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48660			B-cell receptor-associated pro...		Lus10022777 [exp]	0	1
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10024204 [exp]	1.7	0.8838
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10029253 [exp]	3.7	0.8502
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10037998 [exp]	7.0	0.8065
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	7.3	0.8408
AT4G25240		SKS1	SKU5 similar 1 (.1)		Lus10031722 [exp]	8.0	0.8382
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10024604 [exp]	13.8	0.8309
AT2G35470			unknown protein		Lus10035375 [exp]	14.6	0.7332
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10032241 [exp]	18.8	0.7979
AT5G25510			Protein phosphatase 2A regulat...		Lus10017752 [exp]	20.6	0.7960
AT5G45750		AtRABA1c	RAB GTPase homolog A1C (.1)		Lus10007306 [exp]	22.0	0.7755

Compare expression of checked genes

Lus10022777 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.