Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07180 356 / 4e-117 GPI transamidase component PIG-S-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038186 [exp] 421 / 1e-141 AT3G07180 730 / 0.0 GPI transamidase component PIG-S-related (.1.2.3) Lus10025916 [exp] 375 / 1e-124 AT3G07180 736 / 0.0 GPI transamidase component PIG-S-related (.1.2.3) Lus10022779 [exp] 55 / 1e-08 AT3G07180 105 / 9e-40 GPI transamidase component PIG-S-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245000 [exp] 371 / 3e-123 AT3G07180 671 / 0.0 GPI transamidase component PIG-S-related (.1.2.3) Potri.002G244801 [exp] 233 / 1e-72 AT3G07180 526 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10510 [flax] [poplar] PIG-S Phosphatidylinositol-glycan biosynthesis class S protein
Representative CDS sequence Show only first row Show all	>Lus10022778 pacid=23160031 polypeptide=Lus10022778 locus=Lus10022778.g ID=Lus10022778.BGIv1.0 annot-version=v1.0 ATGGCGAAGATCTCTGAGCTCCCGCCCTCCACAGGGTCTCTGCCGGAGAGATCATCGGGGACGGATTTCAACTCCAAGACCATGCGTACAACCAAACCGG GACTGAAGAGGCTCTTGCTCACCTTCTCGATGCTCGTCTCCTTCCTTCTAGGTTTTGCCTTCCTATGTAAAACCGTCGAGATCTACCGGTCGCCGCTGCC GTTCGACGAAATGGACGCTATCTCGAAAGAAATCGAATCCAGTCACGTACAGTGTCATTTCCAAGCAGTGTTCCTCAATCTAAAATCGAGTCCAAGCAGT GATTTCAAACCGAATTGCTTGTATGGATGCGATGGCATAGGAAATGTAGTGAACTTTACTGATGAAGATGCGGTGGTTGATGAAGCTTTGAGGTCTGTGC TGGATGAGAGCTGTGTTGGTTTTGGCGGGAAAATGTATACTGCGGTGGTAGTGGTGAATGGAGGAGCTCTTGATGTGCCAAGAGCAATTGTTGGGAAGTA CCGCCATGGATGGATCGTTGGTAAGGAATTGGATGCTGAAGATGCGACGGGGAGAGTTGTAGAGATGTTCGTAAAGGTGTTTATTAATGGAGCGCGAGAG GAAGGAGGAATTCATGGAGAGTTCACGCCCGTTGGTGCTGATGGGAGAATCTTCCTCTCGTTTAGTTTGCTCAATTCGAATCCGGAGGATTGGATTTATG ACTGGGACTTCCAGAGATTAGATGAGACTCTGCTGAAACCTGTAATTGAAGCACTGAAACCTATCGCAAACATAAGCGTGGAGAGCCAAGTATTGTACTA TACCCCAAAGTCGGCATTTTCGCGCTGGGATGAGAGTTTCGCCAGCTACGTGTTTAGCACCAAAGAGCTTCCTCTCTTTGTGAACTCGAACGAGTGGCAC TTGGATACATCGGTTGCTGCTGGTGGGCGATCGAAGATATTGCAATTTTTGGTGTATATCCTTTTTATCCGTTCTCATGTAACATTGATCACAACAAGAA CGTTACCCTTTTCTTGTGTACTGACTATCGATCTCGATTCTTCACTTGCAGATATGTACCATCTTCAGATGAATGCCCTCTTGCTCTACAGCTTCCGAGT GGAGAGATCTCTAGAACGAACGGGTTCATATCTCAGTATTTCCTTCCCGATCTTGAAACTCACCAATTGGATGTGGGGAGGTGTCATGGTCTGGAATACA CAAAGCTGCCTGGAGGATTCAGATAGCGAGCTTCCTGCTAGACACTTGTTGTCTGATGATGTGATTCCACGCTCTTTAGCTAGCGAAACTGGCTTCACGG AATGGGAGCTGGATGTCTTGTCACGGCAACACGCTTCAATCTTCGTCCGAGCGGAACAACTCTTGGATCCCTTTCGAGATTGGTAA
AA sequence Show only first row Show all	>Lus10022778 pacid=23160031 polypeptide=Lus10022778 locus=Lus10022778.g ID=Lus10022778.BGIv1.0 annot-version=v1.0 MAKISELPPSTGSLPERSSGTDFNSKTMRTTKPGLKRLLLTFSMLVSFLLGFAFLCKTVEIYRSPLPFDEMDAISKEIESSHVQCHFQAVFLNLKSSPSS DFKPNCLYGCDGIGNVVNFTDEDAVVDEALRSVLDESCVGFGGKMYTAVVVVNGGALDVPRAIVGKYRHGWIVGKELDAEDATGRVVEMFVKVFINGARE EGGIHGEFTPVGADGRIFLSFSLLNSNPEDWIYDWDFQRLDETLLKPVIEALKPIANISVESQVLYYTPKSAFSRWDESFASYVFSTKELPLFVNSNEWH LDTSVAAGGRSKILQFLVYILFIRSHVTLITTRTLPFSCVLTIDLDSSLADMYHLQMNALLLYSFRVERSLERTGSYLSISFPILKLTNWMWGGVMVWNT QSCLEDSDSELPARHLLSDDVIPRSLASETGFTEWELDVLSRQHASIFVRAEQLLDPFRDW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07180			GPI transamidase component PIG...		Lus10022778 [exp]	0	1
AT3G07180			GPI transamidase component PIG...		Lus10022779 [exp]	3.6	0.8038
AT5G43600		ATAAH-2, UAH	ARABIDOPSIS THALIANA ALLANTOAT...		Lus10021221 [exp]	5.5	0.7650
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010376 [exp]	19.9	0.7265
AT1G03180			unknown protein		Lus10000654 [exp]	27.1	0.7482
AT1G09010			glycoside hydrolase family 2 p...		Lus10000159 [exp]	37.7	0.7421
AT1G69550			disease resistance protein (TI...		Lus10040368 [exp]	41.9	0.7061
AT5G17620			unknown protein		Lus10001340 [exp]	64.5	0.7121
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	70.0	0.7001
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	77.8	0.6925
AT5G63040			unknown protein		Lus10039957 [exp]	87.8	0.6976

Compare expression of checked genes

Lus10022778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.