Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07180 0 / 1 GPI transamidase component PIG-S-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022778 [exp] 55 / 4e-09 AT3G07180 357 / 2e-117 GPI transamidase component PIG-S-related (.1.2.3) Lus10038186 [exp] 0 / 1 AT3G07180 730 / 0.0 GPI transamidase component PIG-S-related (.1.2.3) Lus10025916 [exp] 0 / 1 AT3G07180 736 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G245000 [exp] 0 / 1 AT3G07180 671 / 0.0 GPI transamidase component PIG-S-related (.1.2.3) Potri.002G244801 [exp] 0 / 1 AT3G07180 526 / 0.0 GPI transamidase component PIG-S-related (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022779 pacid=23159971 polypeptide=Lus10022779 locus=Lus10022779.g ID=Lus10022779.BGIv1.0 annot-version=v1.0 ATGTCGGTACTGCAGGTGATTCCACGCTCTTTAGCTAGCGAAACTGGCTTCACGGAATGGGAGCTGGATGTCTTGTCACGGCAACACGTTCCCTCACTGC CACAGATGATCATTAAGGACGAGATAGGAAAGCAGGTAACTTTATCGCTCAAGGCACCGAAATTTGCTCAAAGCAACGCCTCCGCGGGACTTTGCGACGC CTCTACAGTTAGTGTCGGCAAGGGAAGCGAGGTCATTGGCAGAGGATGCGTTCTTCCACCCGCCGATTATGTCTGTCAGCTACTTCTCCTTCGAGCACTG TTTCACTGTCTACTCGCCATTCTTCCTGCCAGTGTCTTCACATGTTCTCCTTGCCGCAATAAGAGAATGGAGAAGATACAAGAAAGAAAATGCCAAGTAC TTGCTCTCTACAGCAAAGACGTAGTAGTCAGTGCATGTCGTACAGATCTTGATCCGTACCTTCTATCCTTATCGTCAAAGTTCGCGGAGAGCGGCTGTTG CTGA
AA sequence Show only first row Show all	>Lus10022779 pacid=23159971 polypeptide=Lus10022779 locus=Lus10022779.g ID=Lus10022779.BGIv1.0 annot-version=v1.0 MSVLQVIPRSLASETGFTEWELDVLSRQHVPSLPQMIIKDEIGKQVTLSLKAPKFAQSNASAGLCDASTVSVGKGSEVIGRGCVLPPADYVCQLLLLRAL FHCLLAILPASVFTCSPCRNKRMEKIQERKCQVLALYSKDVVVSACRTDLDPYLLSLSSKFAESGCC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07180			GPI transamidase component PIG...		Lus10022779 [exp]	0	1
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	1.7	0.8344
AT3G07180			GPI transamidase component PIG...		Lus10022778 [exp]	3.6	0.8038
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	11.0	0.8336
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	11.9	0.7691
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	16.7	0.8101
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	18.3	0.8175
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	19.6	0.8048
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10000106 [exp]	20.4	0.8230
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	21.6	0.7743
AT5G63040			unknown protein		Lus10039957 [exp]	21.8	0.7753

Compare expression of checked genes

Lus10022779 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.