Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07170 219 / 4e-73 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G48680 171 / 5e-54 Sterile alpha motif (SAM) domain-containing protein (.1) AT1G70180 71 / 1e-14 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) AT2G45700 49 / 8e-07 sterile alpha motif (SAM) domain-containing protein (.1) AT3G48800 44 / 2e-05 Sterile alpha motif (SAM) domain-containing protein (.1) AT5G23680 44 / 2e-05 Sterile alpha motif (SAM) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011841 [exp] 362 / 9e-126 AT3G07170 196 / 9e-61 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10038185 [exp] 291 / 2e-101 AT3G07170 234 / 9e-79 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10025917 [exp] 179 / 5e-58 AT3G07170 157 / 3e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10014516 [exp] 85 / 1e-19 AT1G70180 80 / 1e-16 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10030825 [exp] 60 / 1e-10 AT1G70180 104 / 8e-25 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10030661 [exp] 57 / 1e-09 AT1G70180 102 / 6e-24 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Lus10038078 [exp] 50 / 2e-07 AT2G45700 767 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Lus10016718 [exp] 40 / 0.0005 AT5G23680 173 / 6e-52 Sterile alpha motif (SAM) domain-containing protein (.1) Lus10036012 [exp] 40 / 0.0006 AT5G23680 171 / 4e-51 Sterile alpha motif (SAM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244700 [exp] 273 / 4e-94 AT3G07170 213 / 1e-70 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.014G190800 [exp] 267 / 6e-92 AT3G07170 218 / 1e-72 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.008G193300 [exp] 77 / 1e-16 AT1G70180 122 / 3e-31 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.010G036500 [exp] 75 / 5e-16 AT1G70180 134 / 1e-35 Sterile alpha motif (SAM) domain-containing protein (.1), Sterile alpha motif (SAM) domain-containing protein (.2) Potri.006G218300 [exp] 47 / 3e-06 AT2G45700 732 / 0.0 sterile alpha motif (SAM) domain-containing protein (.1) Potri.012G104700 [exp] 45 / 2e-05 AT3G48800 166 / 2e-49 Sterile alpha motif (SAM) domain-containing protein (.1) Potri.015G104000 [exp] 44 / 4e-05 AT3G48800 115 / 5e-30 Sterile alpha motif (SAM) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0003 [flax] [poplar] SAM PF00536 [flax] [poplar] SAM_1 SAM domain (Sterile alpha motif)
Representative CDS sequence Show only first row Show all	>Lus10022780 pacid=23160027 polypeptide=Lus10022780 locus=Lus10022780.g ID=Lus10022780.BGIv1.0 annot-version=v1.0 ATGTATGCTGATCGAGTTGAAGTCTCGGGGAAGATGTCCGTCAAGGAGCGTCTCAATGGAAGCTCTCTCGGCGACTCGTCTCGCCGGAAACAAGTCACCG GTAAAAGGCAAAGGCAAGATGACAAGTGGGAGCACGATCTCTACAATAACGAACCGCGTACTTCAAACCGTAGAATCGATGGTCAAGATCTTCGACTGAA GCTGCAGAAGAAGAATGCATCAGCTCCTGCTGAAAGTGGGAGAAGAAGTGGCGTGCGAGATTTGCGAGAGAAACTATCTGGAACAATGAATCCACAACCA GTGAATGCTGATCCTCCCAAGTTGACTAGGAGAAGCGCTGCTGTTGAAGCTCTTCAACCCGAGGTTAATAAAGTTGCCACTGTAGGAGCCAAAAAGAAGG CCCAGCAGAAGGCAAATGTATCATCAGTGGACAGCTTTTTGCAATCATTGGGTCTTGAAAAATACCTGATCACTTTCCAGGCTGAGGAAGTTGATATGAC TGCGCTCCTACACATGACTGATGATGATCTCAAGGCTATGGGAGTTCCAATGGGTCCAAGAAAGAAGATACTGCTGGCATTGGAATCAAGGGGCTAA
AA sequence Show only first row Show all	>Lus10022780 pacid=23160027 polypeptide=Lus10022780 locus=Lus10022780.g ID=Lus10022780.BGIv1.0 annot-version=v1.0 MYADRVEVSGKMSVKERLNGSSLGDSSRRKQVTGKRQRQDDKWEHDLYNNEPRTSNRRIDGQDLRLKLQKKNASAPAESGRRSGVRDLREKLSGTMNPQP VNADPPKLTRRSAAVEALQPEVNKVATVGAKKKAQQKANVSSVDSFLQSLGLEKYLITFQAEEVDMTALLHMTDDDLKAMGVPMGPRKKILLALESRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10022780 [exp]	0	1
AT3G48710			DEK domain-containing chromati...		Lus10025759 [exp]	5.7	0.8903
AT3G60670			PLATZ transcription factor fam...		Lus10009283 [exp]	6.8	0.9147
AT3G48710			DEK domain-containing chromati...		Lus10022439 [exp]	9.4	0.8853
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Lus10023236 [exp]	10.8	0.8106
AT3G63480			ATP binding microtubule motor ...		Lus10029983 [exp]	11.9	0.8331
AT5G02570			Histone superfamily protein (....		Lus10040850 [exp]	14.6	0.8953
AT5G03500			Mediator complex, subunit Med7...		Lus10016217 [exp]	20.5	0.7943
AT1G04150			C2 calcium/lipid-binding plant...		Lus10011271 [exp]	22.0	0.8851
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	28.6	0.8196
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10015637 [exp]	38.7	0.8313

Compare expression of checked genes

Lus10022780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.