Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48170 156 / 6e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022783 [exp] 242 / 5e-84 AT1G48170 177 / 3e-58 unknown protein Lus10011844 [exp] 216 / 8e-74 AT1G48170 176 / 1e-57 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G099700 [exp] 164 / 8e-53 AT1G48170 191 / 4e-63 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022781 pacid=23159914 polypeptide=Lus10022781 locus=Lus10022781.g ID=Lus10022781.BGIv1.0 annot-version=v1.0 ATGGAAAATGCTGGCGGGGAACTGAGAATCCACTGTTTCACAGAAGTAGTCGATGAAGTCACTCTCCATTTCCAGATCATACGACTCCCCAAGCAGATAT ACGCATGGGTCGGTTGCAATTCCTCCAAGTTGGGTCACCTTTATGCAGCTGCCAACACTCGCCCTTCGCAGAGTGGCAGTGTAAGTGTGAGCTGTGTGCT CGGAGGAGCTTCTGATAACACCGGGTCTGGTATTGCCCGCCGTATAGTGTTAAAGAGTGGCCTTAACGTCATGCTTGCTTGTAATATCCCCAAGAACAGT CCTATGATTGAGGCAAATGCCGAGAGGAAAATGATGGAGAAGCTCGTTCAACTGGGATATACGCAGCCAAACCTAAAACGATTGTCTCTTTGCGATAACT GA
AA sequence Show only first row Show all	>Lus10022781 pacid=23159914 polypeptide=Lus10022781 locus=Lus10022781.g ID=Lus10022781.BGIv1.0 annot-version=v1.0 MENAGGELRIHCFTEVVDEVTLHFQIIRLPKQIYAWVGCNSSKLGHLYAAANTRPSQSGSVSVSCVLGGASDNTGSGIARRIVLKSGLNVMLACNIPKNS PMIEANAERKMMEKLVQLGYTQPNLKRLSLCDN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48170			unknown protein		Lus10022781 [exp]	0	1
AT1G48170			unknown protein		Lus10022783 [exp]	1.0	0.9343
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020315 [exp]	3.5	0.7763
					Lus10008493 [exp]	4.5	0.7342
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10008900 [exp]	7.7	0.7545
AT1G14990			unknown protein		Lus10035021 [exp]	8.5	0.7384
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Lus10035702 [exp]	9.5	0.6906
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	11.5	0.7054
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10015272 [exp]	12.4	0.7485
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	13.5	0.7725
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	14.1	0.7066

Compare expression of checked genes

Lus10022781 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.