Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25050 246 / 5e-81 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT4G13090 245 / 1e-80 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 236 / 5e-77 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT5G13870 207 / 5e-66 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT4G37800 202 / 4e-64 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT2G06850 197 / 4e-62 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT5G65730 196 / 2e-61 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT1G11545 194 / 1e-60 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT2G14620 193 / 4e-60 XTH10, XTR14 xyloglucan endotransglucosylase/hydrolase 10 (.1) AT4G03210 188 / 3e-58 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022784 [exp] 573 / 0 AT3G25050 239 / 1e-78 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10011845 [exp] 544 / 0 AT3G25050 241 / 3e-79 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10025919 [exp] 287 / 3e-97 AT4G13090 318 / 4e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10038182 [exp] 287 / 5e-97 AT4G13090 319 / 2e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10032879 [exp] 213 / 1e-67 AT4G13090 248 / 2e-81 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10039643 [exp] 205 / 8e-65 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10011597 [exp] 204 / 1e-64 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10003022 [exp] 198 / 4e-62 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10035654 [exp] 196 / 2e-61 AT2G14620 437 / 6e-156 xyloglucan endotransglucosylase/hydrolase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244200 [exp] 254 / 5e-84 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.003G159700 [exp] 206 / 4e-65 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.001G071000 [exp] 205 / 6e-65 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 202 / 8e-64 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 201 / 1e-63 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.009G083800 [exp] 192 / 6e-60 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.006G170001 [exp] 187 / 3e-58 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 187 / 3e-58 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G170100 [exp] 187 / 3e-58 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G084300 [exp] 186 / 1e-57 AT4G28850 403 / 1e-142 xyloglucan endotransglucosylase/hydrolase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10022782 pacid=23160035 polypeptide=Lus10022782 locus=Lus10022782.g ID=Lus10022782.BGIv1.0 annot-version=v1.0 ATGAAGAAATCAACTGTTGTTCTTCTGATGATCATCCTTGTGGTACCGAATATTGCCGATCATGGCCAAACTCGATTCGAAGACAATTTCATAGTCACGT GGGGATTCGATCACTTCCAGCTGCTTGACAATGGCACTGAAGTTCAGCTCACCCTGGATGGTGTCAAAGGAGGTGCTGGATTCGAGTCCAAACGGAGTTA CGGGTCGGGAGTCTTCCACGTGAAGATGAAGGTTCCTAAGAGGAATTCTTCTGGAGTTGTCACTGCTTTCTACCTAACTTCCGATGATCCGGGACAAGAC GAGCTAGATTTTGAGATGCTCGGCTCGCCGGACGACGGTAGTCCGTTCAATTTACAGACGAACATGTTTGTAAACGGCGTCGGAGGCAAAGAGCAACACA TTCTTCTCTGGTTCGACCCAACCGCCGATTTCCACGACTACACTATCCTCTGGAACCAACATCAAATCATATTTTCCGCCGACGGGGTTCCGGTGAGAGT GATAAGGAAATCCGACGTCACGGCCTACCCGTCGACGAAGGCGATGACGGTGGTTGCCAGCCTGTGGAATGGAGAGTGGTGGGGGAAAGTCAACTGGAGC TACGCTCCCTTCGTGGCGAACTTCAAGGATTTCAGCCTCGCCGGATGTCCCGCCGTCGAGGGTTCCGATCTGGCACCGTGCTTCTCTTCGTCGGAGGATT ACTGGTGGAATTCGGAGGAGTATTGGACGTTGGATCCGGTGCAAGAGAAGGCGTACGAGGATGTCACTTTGCAGTATATGGGATTTAACTATTGCGACGT TATTAAGACTCCTCTGCCGCCGGAATGTGACCGGTGA
AA sequence Show only first row Show all	>Lus10022782 pacid=23160035 polypeptide=Lus10022782 locus=Lus10022782.g ID=Lus10022782.BGIv1.0 annot-version=v1.0 MKKSTVVLLMIILVVPNIADHGQTRFEDNFIVTWGFDHFQLLDNGTEVQLTLDGVKGGAGFESKRSYGSGVFHVKMKVPKRNSSGVVTAFYLTSDDPGQD ELDFEMLGSPDDGSPFNLQTNMFVNGVGGKEQHILLWFDPTADFHDYTILWNQHQIIFSADGVPVRVIRKSDVTAYPSTKAMTVVASLWNGEWWGKVNWS YAPFVANFKDFSLAGCPAVEGSDLAPCFSSSEDYWWNSEEYWTLDPVQEKAYEDVTLQYMGFNYCDVIKTPLPPECDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	0	1
					Lus10000351 [exp]	2.2	1.0000
					Lus10002886 [exp]	3.2	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	3.9	1.0000
					Lus10014748 [exp]	4.5	1.0000
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	5.0	1.0000
					Lus10023108 [exp]	6.0	1.0000
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	6.5	1.0000
					Lus10024321 [exp]	6.9	1.0000
AT2G02850		ARPN	plantacyanin (.1)		Lus10028396 [exp]	7.3	1.0000
					Lus10022162 [exp]	7.7	0.7497

Compare expression of checked genes

Lus10022782 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.