Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25050 240 / 1e-78 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT4G13090 237 / 1e-77 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 228 / 3e-74 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT5G13870 201 / 2e-63 EXGT-A4, XTH5, XTR12 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) AT4G37800 195 / 3e-61 XTH7, XTR15 xyloglucan endotransglucosylase/hydrolase 7 (.1) AT2G06850 191 / 2e-59 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1) AT5G65730 189 / 1e-58 XTH6, XTR10 xyloglucan endotransglucosylase/hydrolase 6 (.1) AT1G11545 187 / 6e-58 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT2G14620 186 / 2e-57 XTH10, XTR14 xyloglucan endotransglucosylase/hydrolase 10 (.1) AT4G03210 181 / 1e-55 XTH9, EXGT-A6, XTR16 xyloglucan endotransglucosylase/hydrolase 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022782 [exp] 573 / 0 AT3G25050 246 / 5e-81 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10011845 [exp] 538 / 0 AT3G25050 241 / 3e-79 xyloglucan endotransglucosylase/hydrolase 3 (.1) Lus10025919 [exp] 280 / 3e-94 AT4G13090 318 / 4e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10038182 [exp] 280 / 3e-94 AT4G13090 319 / 2e-109 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10032879 [exp] 205 / 9e-65 AT4G13090 248 / 2e-81 xyloglucan endotransglucosylase/hydrolase 2 (.1) Lus10039643 [exp] 197 / 5e-62 AT5G65730 469 / 1e-168 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10011597 [exp] 197 / 6e-62 AT5G65730 469 / 7e-169 xyloglucan endotransglucosylase/hydrolase 6 (.1) Lus10003022 [exp] 191 / 2e-59 AT5G13870 506 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Lus10035654 [exp] 190 / 5e-59 AT2G14620 437 / 6e-156 xyloglucan endotransglucosylase/hydrolase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G244200 [exp] 246 / 4e-81 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.003G159700 [exp] 199 / 2e-62 AT5G13870 500 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.001G071000 [exp] 198 / 3e-62 AT5G13870 504 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.014G140300 [exp] 196 / 3e-61 AT5G13870 527 / 0.0 endoxyloglucan transferase A4, xyloglucan endotransglucosylase/hydrolase 5 (.1) Potri.007G008500 [exp] 194 / 1e-60 AT5G65730 472 / 6e-170 xyloglucan endotransglucosylase/hydrolase 6 (.1) Potri.009G083800 [exp] 186 / 1e-57 AT2G14620 454 / 1e-162 xyloglucan endotransglucosylase/hydrolase 10 (.1) Potri.006G170001 [exp] 181 / 1e-55 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 181 / 1e-55 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G170100 [exp] 181 / 1e-55 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G084300 [exp] 179 / 8e-55 AT4G28850 403 / 1e-142 xyloglucan endotransglucosylase/hydrolase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10022784 pacid=23159950 polypeptide=Lus10022784 locus=Lus10022784.g ID=Lus10022784.BGIv1.0 annot-version=v1.0 ATGAAGAAATCAACTGTTGTTCTTCTGATGATCATCCTTGTGGTACCGAATATTGCCGATCATGGCCAAACTCGATTCGAAGACAATTTCATAGTCACGT GGGGATTCGATCACTTCCAGCTGCTTGACAATGGCACTGAAGTTCAGCTCACCCTGGATGGTGTCAAAGGAGGTGCTGGATTCGAGTCCAAACGGAGTTA CGGGTCGGGAGTCTTCCACGTGAAGATGAAGGTTCCTAAGAGGAATTCTTCTGGAGTTGTCACTGCTTTCTACCTAACTTCCGATGATCCGGGACAAGAC GAGCTAGATTTTGAGATGCTCGGCTCGCCGGACGACGGTAGTCCGTTCAATTTACAGACGAACATGTTTGTAAACGGCGTCGGAGGCAAAGAGCAACACA TTCTTCTCTGGTTCGACCCAACCGCCGATTTCCACGACTACACATACCTCCGGAACCAACATCAAATCATATTTTCCGCCGACGGGGTTCCGGTGAGAGT GATAAGGAAATCCGACGTCACGGCCTACCCGTCGACGAAGGCGATGACGGTGGTTGCCAGCCTGTGGAATGGAGAGTGGTGGGGGAAAGTCAACTGGAGC TACGCTCCCTTCGTGGCGAACTTCAAGGATTTCAGCCTCGCCGGATGTCCCGCCGTCGAGGGTTCCGATCTGGCACCGTGCTTCTCTTCGTCGGAGGATT ACTGGTGGAATTCGGAGGAGTATTGGACGTTGGATCCGGTGCAAGAGAAGGCGTACGAGGATGTCACTTTGCAGTATATGGGATTTAACTATTGCGACGT TATTAAGACTCCTCTGCCGCCGGAATGTGACCGGTGA
AA sequence Show only first row Show all	>Lus10022784 pacid=23159950 polypeptide=Lus10022784 locus=Lus10022784.g ID=Lus10022784.BGIv1.0 annot-version=v1.0 MKKSTVVLLMIILVVPNIADHGQTRFEDNFIVTWGFDHFQLLDNGTEVQLTLDGVKGGAGFESKRSYGSGVFHVKMKVPKRNSSGVVTAFYLTSDDPGQD ELDFEMLGSPDDGSPFNLQTNMFVNGVGGKEQHILLWFDPTADFHDYTYLRNQHQIIFSADGVPVRVIRKSDVTAYPSTKAMTVVASLWNGEWWGKVNWS YAPFVANFKDFSLAGCPAVEGSDLAPCFSSSEDYWWNSEEYWTLDPVQEKAYEDVTLQYMGFNYCDVIKTPLPPECDR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022784 [exp]	0	1

Compare expression of checked genes

Lus10022784 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.