Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07130 830 / 0 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 560 / 0 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT4G13700 551 / 0 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G52810 305 / 3e-98 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52820 301 / 3e-97 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52780 294 / 3e-94 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 282 / 1e-89 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT2G16430 245 / 6e-75 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 238 / 2e-72 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G27190 231 / 7e-70 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011847 [exp] 1094 / 0 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10016667 [exp] 827 / 0 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10016665 [exp] 706 / 0 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10028533 [exp] 674 / 0 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10007119 [exp] 388 / 3e-132 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10017056 [exp] 296 / 7e-95 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021376 [exp] 291 / 5e-94 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 292 / 3e-93 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 291 / 7e-93 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243900 [exp] 882 / 0 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055900 [exp] 853 / 0 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 738 / 0 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.003G176000 [exp] 689 / 0 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.011G138200 [exp] 281 / 4e-89 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 279 / 2e-88 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.001G423700 [exp] 277 / 1e-87 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.004G160100 [exp] 243 / 4e-74 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 240 / 6e-73 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.009G121200 [exp] 238 / 3e-72 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10022786 pacid=23159937 polypeptide=Lus10022786 locus=Lus10022786.g ID=Lus10022786.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCTCCTCTGTTCTCCTTCATCTTCTTCTGCCTCCTATTTCCGTTATCCGTTTCCCCTTCACACATCCCTTCCACCCTCGACGGCCCGATCG ACCCCGTCACCGTCTCCTTCGACATCAGCCTCCGCGGGAACGCCGTCGATTTACCCGACACGGACCCCCGGGTCAAGCGTCGGGTCAATGGATTCGGACC TGAGCAGATATCCGTCTCCCTCTCTTCCACTCATGACTCCGTCTGGATCTCCTGGGTCACAGGAGAGTTTCAAATCGGGTACGACATTAAGCCGTTGGAC CCGGAATCCGTTGCCAGCGTAGTCCGATTCGGTATCCATAGATATCCGTTGAGCCATGAAGCTATAGGGAGATCTCTGGTTTACAGCCAGCTTTACCCTT TCGAAGGCCTTCAGAATTACACTTCTGGAATCATCCACCATGTTCGCCTCACAGGTTTGAGACCGAGCACGAGGTATTACTACAGGTGTGGGGATCCATC GATTGGGGAAATGAGCAATGTGCACAGTTTCAGGACAATGCCAGTTTCGGGGCCGAAGAGCTATCCCAAGAGGATAGCGATATTTGGGGATCTCGGACTG ACTTACAACTCGACTGCAACGATTAGACATGTAGTGAACAACGATCCTGATCTTATGGTGCTGGTGGGTGACGTGACTTATGCGAATCTGTACCTTACGA ATGGGACAGGGTCGGATTGTTATTCGTGTTCTTTCCCCGATACTCCTATCCATGAGACTTACCAACCTCGCTGGGATTACTGGGGAAGGTTTATGCAGGA TGTAATTTCAAAAGTTCCGATCATGGTGGTGGAAGGGAACCACGAGATAGAGCCACAGGTCGATGGAAAGACGTTTGTTTCGTACAGTTCGAGGTTCGCG TTCCCTTCTGAAGAGAGTGGTTCGCATTCGACATTCTACTATTCCTTCAATGCTGGTGGAATCCATTTCATCATGCTTGGAGCCTACATTTCATACGATC AGTCATCTGAGCAGTACAGGTGGCTTGAGCAAGATCTGGCGAATGTTGACAGATCAGTCACTCCTTGGCTTGTAGCTGTGTGGCATCCGCCATGGTACAA TTCATACAATGCTCATTACAGAGAGGTAGAGTGCATGAGGGTGGCAATGGAGCAGCTGATCTACTCGTATGGTGTCGACATTGTCTTCAATGGACATGTT CATGCCTATGAGAGGTCAAACAGAGTCTATAACTACACACTGGACCCTTGCGGGCCAGTATATATCACAATTGGAGACGGTGGGAACAGAGAAAAGATGG CTGTCGAGCATGCTGACCAACCCGGTCAGTGTCCGGAACCATCGACCACGCCTGATGAGTACATGGGTGGCTTCTGTGCATCAAACTTCACTTCAGGTCC AGCAGCTGGTCAGTTCTGCTGGGATCGACAGCCTGATTTCAGTGCCTTCAGGGAAAGTAGCTTCGGCCATGGGATCCTCGAGGTGAAGAACGAGACGTGG GCGCTTTGGAAATGGCACAGGAATCAGGATGAAGTGAGCGAAGTGGGAGACCAGATTTACATAGTGAGGCAGCCTGATAGGTGTCCTGTTGCTGGCAGTG TTCATCTGGTTTCAGATATTTGA
AA sequence Show only first row Show all	>Lus10022786 pacid=23159937 polypeptide=Lus10022786 locus=Lus10022786.g ID=Lus10022786.BGIv1.0 annot-version=v1.0 MASPPLFSFIFFCLLFPLSVSPSHIPSTLDGPIDPVTVSFDISLRGNAVDLPDTDPRVKRRVNGFGPEQISVSLSSTHDSVWISWVTGEFQIGYDIKPLD PESVASVVRFGIHRYPLSHEAIGRSLVYSQLYPFEGLQNYTSGIIHHVRLTGLRPSTRYYYRCGDPSIGEMSNVHSFRTMPVSGPKSYPKRIAIFGDLGL TYNSTATIRHVVNNDPDLMVLVGDVTYANLYLTNGTGSDCYSCSFPDTPIHETYQPRWDYWGRFMQDVISKVPIMVVEGNHEIEPQVDGKTFVSYSSRFA FPSEESGSHSTFYYSFNAGGIHFIMLGAYISYDQSSEQYRWLEQDLANVDRSVTPWLVAVWHPPWYNSYNAHYREVECMRVAMEQLIYSYGVDIVFNGHV HAYERSNRVYNYTLDPCGPVYITIGDGGNREKMAVEHADQPGQCPEPSTTPDEYMGGFCASNFTSGPAAGQFCWDRQPDFSAFRESSFGHGILEVKNETW ALWKWHRNQDEVSEVGDQIYIVRQPDRCPVAGSVHLVSDI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10022786 [exp]	0	1
AT2G01890		PAP8, ATPAP8	purple acid phosphatase 8 (.1....		Lus10019133 [exp]	1.0	0.8407
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10037587 [exp]	4.0	0.8107
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10007346 [exp]	6.6	0.7747
AT3G43660			Vacuolar iron transporter (VIT...		Lus10031922 [exp]	6.7	0.7608
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10037069 [exp]	9.9	0.7481
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10006842 [exp]	11.0	0.7703
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10019985 [exp]	11.0	0.7588
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025774 [exp]	13.0	0.7961
AT3G13340			Transducin/WD40 repeat-like su...		Lus10041268 [exp]	13.6	0.7632
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10000161 [exp]	16.7	0.6903

Compare expression of checked genes

Lus10022786 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.