Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48730 662 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 391 / 1e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G06430 333 / 8e-109 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 181 / 7e-49 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT4G39620 167 / 1e-45 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39980 153 / 1e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G35130 148 / 2e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 149 / 3e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G42310 142 / 5e-36 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G31400 140 / 4e-35 GUN1 genomes uncoupled 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011849 [exp] 909 / 0 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 396 / 2e-133 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000862 [exp] 335 / 9e-110 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 320 / 1e-103 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027552 [exp] 294 / 6e-94 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039311 [exp] 226 / 1e-70 AT3G06430 358 / 5e-123 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033127 [exp] 162 / 2e-42 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10039149 [exp] 161 / 4e-42 AT3G18110 976 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035850 [exp] 155 / 4e-41 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243600 [exp] 727 / 0 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 409 / 9e-139 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G153900 [exp] 339 / 3e-111 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 331 / 5e-108 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G069100 [exp] 174 / 9e-47 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Potri.007G123900 [exp] 158 / 6e-41 AT3G18110 1974 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G036400 [exp] 157 / 9e-41 AT3G18110 1949 / 0.0 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G082400 [exp] 153 / 1e-40 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G166200 [exp] 154 / 8e-40 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G075700 [exp] 149 / 2e-38 AT5G39980 1045 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022787 pacid=23159920 polypeptide=Lus10022787 locus=Lus10022787.g ID=Lus10022787.BGIv1.0 annot-version=v1.0 ATGGCGGCAACTCCTCCACTGTCCACCACCCCAAACCCAATCCCACGCCCTCAACAAAACCAACCAAACCCAGCAGTTTCAGAACGCATCCTCGCCATCC CCATCCCCAACAAACGCAGACCAGAACAGCCACTACTCTCTTCTTCAAGCTCCGCCAATGGCGATTCCACAGCATCAGCGCTCCGGAGAAGCCAGCAGAG AGCAGCGGAGGAGTTGGAGAAGGCGAAGAAGAGAGAAGCCAAGGAGAGGAAAGAAGAGAAGAACAGAAAGACCGGGTCCCGCAAGGCCATCTCAGTGATT CTGCGACGGGAGGCCACTAAAGCCATCATCGAGAAGAAGGTTGGAGGAACCATAAATTCCAGGCGATTGCTTCCCCGGACTGTGCTGGAAGCTCTGCATG AACGGATTACTGGACTTCGCTGGGAATCTGCGCTTAAGGTCTTTGAGCTGCTCAGGGAGCAACTATGGTACAAGCCATTTCCAGGAGTCTACGTAAAGAT GATTTCGATGTTAGGCAAGTGCAAACAGGCCGAGAAAGCTCAGCAGCTATTTCAGGTGATGGTTGGTGAAGGATGTGCTCCATGTCTGGAATCCTACACA GCTCTTGTGTCGGCATATGGCAGGAGCGGTCTGTTCGATAAGACGTTTTCCTTGCTCGAGGAAATGAAGATGACTCCTGATTGTTACCCCGATGTTCATA CTTACTCGATCCTCATCAAGTCGTGCCTGCAAGTTTATGACTTTGAGAAAGTTCAGGTTCTGCTCTCTGACATGGCAGCTTCTGGGATCAGACCTAATGT TGTCACTTACAACACCCTCATCGACTCCTATGGCAAGGCCAAAATGTTTGAGGAGATGGAAGCAACACTAGTGAAGATGCTCGGCCAAAAGAACTGCAAT CCCGACGTATGGACAATGAACTCGGCAATGAGAGCATTTGGCGGGAACGGACAGATCGAAATGATGGAGAAATGCTACGACAAGTTCCAAACCTCCGGCA TCGAGCCAAACATCAAAACCTTCAACATCCTCCTCGACTCGTACGGCAAATCAGGCGAATACCAGAAGATGAGCGCAGTAATGGAGTACATGCAAAAATA CCACTACTCATGGACGATCGTAACTTACAACGTGGTGATCGATGCGTTCGGCCGAGCAGGAGACCTGAAGCAGATGGAGTATATGTTCAGGCTAATGCGG ACCGAGGGGATCAAGCCTAGCTGTGTGACACTCTGCTCCTTAGTTCGAGCCTATGGTCAAGCTGGGAAGCCCGAGAAGATCAGCGGAGTGCTGAGATTGG TGGAGAACTCGGACGTGATGCTGGATACTGTGTTCTTCAACTGCTTGGTAGATGTTTATGGGAAGCTGGAGTGCTTTGTTGAGATGAAGGAAGTGCTCGA GTGGATGGAGGAAAGAGGGTGTAAGGCGGATGTTGTTACTTACAGAACTATGATCAAAGCTTATAGGGATAAAGGGATGAGCAGCCATGTGAAGCAGATT CAGGAGCTTCTTAGATCCGTCGAAGTGAGTCGTATCCCTAAGAAGAGGCCTGATTTTTGA
AA sequence Show only first row Show all	>Lus10022787 pacid=23159920 polypeptide=Lus10022787 locus=Lus10022787.g ID=Lus10022787.BGIv1.0 annot-version=v1.0 MAATPPLSTTPNPIPRPQQNQPNPAVSERILAIPIPNKRRPEQPLLSSSSSANGDSTASALRRSQQRAAEELEKAKKREAKERKEEKNRKTGSRKAISVI LRREATKAIIEKKVGGTINSRRLLPRTVLEALHERITGLRWESALKVFELLREQLWYKPFPGVYVKMISMLGKCKQAEKAQQLFQVMVGEGCAPCLESYT ALVSAYGRSGLFDKTFSLLEEMKMTPDCYPDVHTYSILIKSCLQVYDFEKVQVLLSDMAASGIRPNVVTYNTLIDSYGKAKMFEEMEATLVKMLGQKNCN PDVWTMNSAMRAFGGNGQIEMMEKCYDKFQTSGIEPNIKTFNILLDSYGKSGEYQKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEYMFRLMR TEGIKPSCVTLCSLVRAYGQAGKPEKISGVLRLVENSDVMLDTVFFNCLVDVYGKLECFVEMKEVLEWMEERGCKADVVTYRTMIKAYRDKGMSSHVKQI QELLRSVEVSRIPKKRPDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48730			Pentatricopeptide repeat (PPR)...		Lus10022787 [exp]	0	1
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10043375 [exp]	2.4	0.8716
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	2.4	0.9225
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031565 [exp]	7.7	0.8916
AT3G59760		ATCS-C, OASC	ARABIDOPSIS THALIANA CYSTEINSY...		Lus10027056 [exp]	9.5	0.8628
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	12.6	0.8727
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10012905 [exp]	14.4	0.8685
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	16.2	0.8907
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	17.8	0.8889
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10032688 [exp]	18.1	0.8709
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10032449 [exp]	22.6	0.8660

Compare expression of checked genes

Lus10022787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.