Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24870 1017 / 0 Helicase/SANT-associated, DNA binding protein (.1.2) AT3G24880 1008 / 0 Helicase/SANT-associated, DNA binding protein (.1) AT3G12810 62 / 6e-09 CHR13, SRCAP, PIE1 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011850 [exp] 2925 / 0 AT3G24870 1216 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Lus10007174 [exp] 62 / 1e-09 AT3G12810 281 / 2e-85 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10002974 [exp] 62 / 7e-09 AT3G12810 1071 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10038177 [exp] 49 / 3e-06 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189900 [exp] 1345 / 0 AT3G24870 1237 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Potri.002G243400 [exp] 1118 / 0 AT3G24870 1017 / 0.0 Helicase/SANT-associated, DNA binding protein (.1.2) Potri.002G243350 [exp] 173 / 4e-44 AT3G24870 184 / 6e-48 Helicase/SANT-associated, DNA binding protein (.1.2) Potri.001G207700 [exp] 65 / 7e-10 AT3G12810 2199 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.003G022100 [exp] 57 / 2e-07 AT3G12810 1824 / 0.0 PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07529 [flax] [poplar] HSA HSA
Representative CDS sequence Show only first row Show all	>Lus10022788 pacid=23159901 polypeptide=Lus10022788 locus=Lus10022788.g ID=Lus10022788.BGIv1.0 annot-version=v1.0 ATGCATGTCTGCGATTCGAGGTCTGATGTCTTGATAAATGCTGAGGTTGACTCCATGGGAGGGGTTGTTGACGGCGGAGTTGGTAGTGGCATCAAAACCT CTCCGCGTAGAGCGGCAATAGAAAAGGCTCAGACAGATCTTAGACAAGAGTATGATGTTCGCGAGGAAAGGAGAAGGGAACTGGAGTTTCTTGAGAAAGG TGGAAATCCCTTGGACTTTAAATTTGGCAACACTGCTTCAATTAGTGTCCAGTCCACCTCACTCACTGATCAGCAGGTGGAACATGTTGTGACTAGCAAA GCTAAGGGTAGTTTTGCTTTGACTGCATCAACCCATGGGGATTCTCTTGAGAGTAGTGGTCAACCCGGGCCTACTACAGTTTGCGAACCTAATAGTGCTG ATAATTTTGATGGTCAAACAAGTTTACTTGGAGGTGAAAGAAATCGTAGACATGTCAGCAGAAGAAACAATGTTGCTCCATCTCAGCAGTCGTCTCGAAT GGAAGGTACTCAAAATGCAAAGGAATCTGAAGATTCTGCTATAGTTCGTCCATATGCGCGAAGGAATAGGTCCCGGCCAAATCGAGATGGTGCTAAGTCA ACTTCTGGTGATGTGGTTAAGAGAACCAGTGGCCATGGATCTTCTTTACCCATTCGTGGGGGTTCTAGGAATTTGAAGTTGATATCCGAGTCAAACAGTC AGAAAGACAATACATTTGCTACTGCTGGTAAGCCAAAACCTGCACTTTCAAATGGGGAAATGCTCCCTCATACGGTGGAAGTGAAGGCTCTGCAACCAAC AGATGCAACTAAAAGCAGTCATGAGGTTAAATTGGATGTTAGAGAGTCCAAGTCCAATGTTTTGAAAGACAAGGAAAAAGTACAACCTGCAGACGCTGAC ATTCAGAAACTACAAACTAATGACACTGTCAGGCATCCTGATAATGGAGTTAAGGAGCAAGTAGTTTCAGCTGGCCTTGAGTCTTCGCCTTGTGCAGCTG CTGAGAGATCAGAGGTTGAAGTTAGTTATGCTCAGTTGAATATCGCTAGTGACCAGAAAGCCAATGATAAAGTTGGTCAAAATGGTGGTATCACTAACGT GGCAAAGAGATTGGATTCAGATTCCTCTTGTACCCCAAATAGCCTTAGCTTAGATGTAAATAAAGGAGGCAATTTGTCTATTAGATGTAGGGAGGATGAT TCTATCAGAGTTACTTTAACGCAGGCAGCAGAATTTGAAGGAACAAAAATCTCTGGTGCAGGTGAAACTGGGAAGGATAGGAATGATACTACCGCGGTTG AGAATAGTGCTTCTGATGCTGCAGGTGTCAACGCTGCTTCTATAAATGTTTCTGCTAATGGCATGGCAGCCAAGGTAGTAGAAGATACAAAAAAGCCTTC TGATCCGCAGATTGAGGCTAACACCTCAAATCTTGGAGCAACATATCAAAATGAGATTGCTGCATGTGTCAGTGATGAGAAAGTTATCAACTCACTAGCC AATGAGTTGATATCCAACAGAGAACCCACTGTTGTGAAATCCTTGCGAGAGGAGCTTCCAAAAATTCATTTTCTAGAGAAAAACTCTGCTTCTGCCGCTG AATCTCAATCTTGTCCTGACAGAGACATTAAGATAGGCAGGGCTCTTGAAGATTCTATATTGGAGGAGGCCCGGAGTATAGAGGCCAAGCGGAAGAGGAT TGCCGAATTATCTTTCCGAACAGCTAAGGTGGACCCATGCTACAAGTCTCACTGGGATTTTGTCCTTGAAGAAATGACATGGCTGGCAAATGATTTTGCA CAGGAGCGCCTTTGGAAACTGACTGCTGCTGCACAAATATGTCGCCGTGCTGCAATGAGTTCTCGACTGAGAGTTGATGAACAAATTCAATGTGGGAAGC TAAAACAAGTGTCATACACAATGGCAAAAGCTGTGATGCAGTTCTGGCAATTGGCAGAAGCAAAGCTTCGTTCTGACAGAAGTCTTGGTCCAGAAACAGA CTTTAAAGAGAACAAACCTGCTAATGGCAAGGACGCGTGTAAAGACTTTGAGCAACAAAGTCCCAGAAAGAATGGTATTCAGGGATATGCAGTGAGATTT CTGGAACTTAACACTTTTCCAGTTCCTGTACTTCAAGCAGAACAGCCGGCAACTCCAGACCTGATAGGCGAAACTGGAGTTAAGGAAGTTTCATGGGATG ATCATTTGACTGAAGAGAGCTTGTTTTACGCAGTCCCTTCTGGTGCAATTGACTCCTATAGAAGATCAATTGAATCACACTTGGTTCAGTTTGAGTTTTC ACTTCAGAAAACTGGCAGTAGCTTGCAAGACGAGGATGATACATCCATGGTTGGTGCTGGTGGAGACTTTGGATATGCTGAAAATGGATATGAGGAGGAT GAAGGTGAAACTAGTACATACTATTTGCATGGAGCATTTGAAAGTAGAAAGCGGAAAAAACATGAGCAAAAGAAAAGGAAACACTTCATGAAGTCATTCC CAACAAGGTCATATGAGGTGGGAGCTGATATGCTATATGGAACGGTTGGGCCTTCACCAAATACCTTCTTTGGGAAACGTCCTGCCAGTAATCTTGGTCC GATTCCACCAAAACGCATGCGCACTGCTTCAAGGCAGAGAGTTATTGGTCCTTTCGGCACAGGAGGTACTGCAGGTCCATCTGCTCCGGCAAAGACTGGT GCTTCAAGTGGAGACACGAGTTCGTTTCAGGATGATCAAAGCATGTATGGTGGGTCTCAAATCCAGAAAGGCATGGAGGTTGATTCTGTTGCTGAGTTTG AAAAGCGTCTCTCTTATGATTGCTCAGATGTTATGACAAAGCCAAAAAAGAAGAAGAAGGCCAGGCCCCTGGGTTCTACTTATGAACAGGGTTGGCACCT CGATTCAACCACACTTGTTGAACAGGTCATTCAAACTTCTTTACCTCAGTTGCATAGAGAGGACTCTAGAAAGAGGTCAGAGAATCATCATTTTGACTCT AACGGGACTACTGGTGCATATGGGCAACACACTTGGAAAAAGCCAAAGTTGATGAAGCAATCAGCAGATGCTTTTGACAATGTAGCTCCATCGACTGGGC CTATTCCTTCTGTATCAGCTTCTCATAGTAATATGCCCACCACAAATCGATTTATGAGATTGATTAATGGCAGGGACAAGGGAAGGAAAGCCAAGTCGCT GAAGCAGATGTCTGCAGGGCAGCCTGGACTTGGAGGTTCATGGTCGCTCTTTGAGGATCAGGCACTTGTTGTCCTTGTACATGACATGGGTCCAAACTGG GAGCTTGTGAGTGATGCTATCAATAGCACCCTCCATTTTAAGTGTATATTTCGTGCACCTAAAGAGTGCAAGGAACGACATAAAATTTTGATGGACAAGG GTGATGGAGATGGAGCCGACAGTGCTGAAGATTCAGGGACTTCTCAATCATATCCGTCAACTTTGCCTGGCATCCCAAAGGCACGATCACTTACCTTTCA AATACTTTGTGCGAGACAATTGTTTCAGCGGTTGCAAGGGCCTATGGAAGAGGAAGCTATCAAGTCTCATTTTGAAAAGATTATTATGATTGGCAAGAAA CTCCATTATAGGAGGAGTCAGCATGATAATCAGGATCCTAAGCACATACCAGTTCACAATTCTCATGTCATTGCTCTCTCCCAAGCTTTCCCAAATAACC TGAATGGAGGTGTCCTGACGCCTATTGAGCTGATTGATCTGAATCCTTCAAGTCCAGATGCCCACATTCTTGGGTATCAAGGTTCTCATACTAGTGGTTT GCCCATGCCAAGTCAAGGTGTTGTGGGATCAATACTTCCCGCGTCTGGTGCAAATCCTTCTCCACAAGGGTCCTCTGGCATGGCTCTGAGCAATAATTCA CCATCGCCATCTGGTCCGCTCCCTCCTTCTGCAAGGGATGGAAGATTCAGTTCTCCAAGAACATCTTCGCGTGCTAATGAGCACCCGAGAATGCAACATT ATAACCAAATGCCGGGGCGAAACATGCAGCAACAGCAGCCGAACCAGTCTGTTTCTGGGCCTCTACCTGGTGGGAATAGTATGGGCATGATGCACGGGAT GAATAGAGGCATGCCATTGTCAAGGCCTGGCGTCCAGGGAATGACATCGCCGGTGCCAAATTCAAGCAATATGCTTTCTCCTAGTGTGGCTGGGATACCC GGTGGAGTTAATATGCAACCCGGGACTGTGCCAGGTCAACCAAACTCATTGATGAGACCACGTGAGCAACATATGATGCGGCATGCTTTCCCTAACGCAC ACACCTCTCCTCCTATGCAGCCATACTCAGGCCATCCGCATCAAATTTCTCCTCAACAGTCCCACGCGCTCAGCAATCCTAGAGTCCCAGTACCTAATCA GGCACCGACAGCTCAGCAAGCGTATGCAATCCGCATGGCTAAAGAAAGACAAATGCAGCAGAGATATCTTCAACAACAGGAGCAGTTAGCTGCATCTGGG GCCCACATGGCGCCACATGTCCAACCTCAACCGCAACCGCAACTTCCTCTGTCATCATTGCCAATGCAAACTTCATCGCCGCCGGTACCGTTACCAGCAA TGACGCAGCAGACATCATCCCCGATGTCTGTGCAGCAGCAGAAAGCTAACGTAGCCCATCATGGACCAATCAGAACCCCTCAGGGTGGGACCAGTGGCTT GGCCAATCAGATGGTGAAGCAACGGCCTCGGTTATACCAGCAACCTGGCCGGAATCATCCCCAGCAACGGCAATTGTCGCAACAAAAGCTTGTCAAAGGA GCAGGTAGAGGGAACATGCTGGGGAACATGAACGGCGTTTCCATACCTGCGGGAAACGCGGAGAAAGGACAAGGCTTGTATTCTGGTTCTCCGTCACAAC CGGCATCAAAACCGGTGGTTACTGAATCGTCGAACCATTTGCAGCCTCAGCAAAAGCAAATTCCTGCCTTGTCACAACATCCATCGAAACAGCTCCCGCT GTCGCCAGCTGGCAATGCCCCACCGGTTTCTCATCAAGCTGCTACTTCAGCTATGCCTGCACCAAACCAGAAGCAGGTAAATCAAGCTCATGCAACAGTT CAGAGAATGCTTAAACAGAATAATCAGAAGAATGTGGGCTGCTTGCCGATCAAGTCACAAACTGATCAACGTCAGCATGAACAACGGCCTCTTAACAATG TTTCACCGATGGGTATCGGAACGGCTCCAGCTGCACCTACAGGCAGTAATGATACAGCTACTGTGGTTCCACCACCGAGTAAAGTCTCTGATCCTCCTAA TGATTCTGCTAAACCGAATCCCGCCTCCCAAGTTGGTTCTGTAGGAGGCAGCCCGCCTCTTCACACGCCATCGCATCGGGGACCGAACCAGTGGCCTCTG TCAGCCATGGTTTAG
AA sequence Show only first row Show all	>Lus10022788 pacid=23159901 polypeptide=Lus10022788 locus=Lus10022788.g ID=Lus10022788.BGIv1.0 annot-version=v1.0 MHVCDSRSDVLINAEVDSMGGVVDGGVGSGIKTSPRRAAIEKAQTDLRQEYDVREERRRELEFLEKGGNPLDFKFGNTASISVQSTSLTDQQVEHVVTSK AKGSFALTASTHGDSLESSGQPGPTTVCEPNSADNFDGQTSLLGGERNRRHVSRRNNVAPSQQSSRMEGTQNAKESEDSAIVRPYARRNRSRPNRDGAKS TSGDVVKRTSGHGSSLPIRGGSRNLKLISESNSQKDNTFATAGKPKPALSNGEMLPHTVEVKALQPTDATKSSHEVKLDVRESKSNVLKDKEKVQPADAD IQKLQTNDTVRHPDNGVKEQVVSAGLESSPCAAAERSEVEVSYAQLNIASDQKANDKVGQNGGITNVAKRLDSDSSCTPNSLSLDVNKGGNLSIRCREDD SIRVTLTQAAEFEGTKISGAGETGKDRNDTTAVENSASDAAGVNAASINVSANGMAAKVVEDTKKPSDPQIEANTSNLGATYQNEIAACVSDEKVINSLA NELISNREPTVVKSLREELPKIHFLEKNSASAAESQSCPDRDIKIGRALEDSILEEARSIEAKRKRIAELSFRTAKVDPCYKSHWDFVLEEMTWLANDFA QERLWKLTAAAQICRRAAMSSRLRVDEQIQCGKLKQVSYTMAKAVMQFWQLAEAKLRSDRSLGPETDFKENKPANGKDACKDFEQQSPRKNGIQGYAVRF LELNTFPVPVLQAEQPATPDLIGETGVKEVSWDDHLTEESLFYAVPSGAIDSYRRSIESHLVQFEFSLQKTGSSLQDEDDTSMVGAGGDFGYAENGYEED EGETSTYYLHGAFESRKRKKHEQKKRKHFMKSFPTRSYEVGADMLYGTVGPSPNTFFGKRPASNLGPIPPKRMRTASRQRVIGPFGTGGTAGPSAPAKTG ASSGDTSSFQDDQSMYGGSQIQKGMEVDSVAEFEKRLSYDCSDVMTKPKKKKKARPLGSTYEQGWHLDSTTLVEQVIQTSLPQLHREDSRKRSENHHFDS NGTTGAYGQHTWKKPKLMKQSADAFDNVAPSTGPIPSVSASHSNMPTTNRFMRLINGRDKGRKAKSLKQMSAGQPGLGGSWSLFEDQALVVLVHDMGPNW ELVSDAINSTLHFKCIFRAPKECKERHKILMDKGDGDGADSAEDSGTSQSYPSTLPGIPKARSLTFQILCARQLFQRLQGPMEEEAIKSHFEKIIMIGKK LHYRRSQHDNQDPKHIPVHNSHVIALSQAFPNNLNGGVLTPIELIDLNPSSPDAHILGYQGSHTSGLPMPSQGVVGSILPASGANPSPQGSSGMALSNNS PSPSGPLPPSARDGRFSSPRTSSRANEHPRMQHYNQMPGRNMQQQQPNQSVSGPLPGGNSMGMMHGMNRGMPLSRPGVQGMTSPVPNSSNMLSPSVAGIP GGVNMQPGTVPGQPNSLMRPREQHMMRHAFPNAHTSPPMQPYSGHPHQISPQQSHALSNPRVPVPNQAPTAQQAYAIRMAKERQMQQRYLQQQEQLAASG AHMAPHVQPQPQPQLPLSSLPMQTSSPPVPLPAMTQQTSSPMSVQQQKANVAHHGPIRTPQGGTSGLANQMVKQRPRLYQQPGRNHPQQRQLSQQKLVKG AGRGNMLGNMNGVSIPAGNAEKGQGLYSGSPSQPASKPVVTESSNHLQPQQKQIPALSQHPSKQLPLSPAGNAPPVSHQAATSAMPAPNQKQVNQAHATV QRMLKQNNQKNVGCLPIKSQTDQRQHEQRPLNNVSPMGIGTAPAAPTGSNDTATVVPPPSKVSDPPNDSAKPNPASQVGSVGGSPPLHTPSHRGPNQWPL SAMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10022788 [exp]	0	1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Lus10014778 [exp]	1.4	0.9785
AT3G61690			nucleotidyltransferases (.1)		Lus10030266 [exp]	2.8	0.9653
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	2.8	0.9614
AT3G61690			nucleotidyltransferases (.1)		Lus10004019 [exp]	3.0	0.9534
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10022224 [exp]	5.2	0.9636
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10019026 [exp]	6.7	0.9440
AT3G13225			WW domain-containing protein (...		Lus10010578 [exp]	6.9	0.9288
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10010087 [exp]	7.3	0.9417
AT1G02080			transcription regulators (.1.2...		Lus10024660 [exp]	8.8	0.9547
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10007206 [exp]	9.2	0.9447

Compare expression of checked genes

Lus10022788 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.