Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24860 102 / 2e-25 Trihelix Homeodomain-like superfamily protein (.1) AT2G44730 87 / 2e-19 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G58630 68 / 8e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G54390 63 / 2e-11 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G10030 57 / 6e-09 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT3G24490 44 / 7e-05 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT5G05550 42 / 0.0003 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G11100 41 / 0.0005 Trihelix sequence-specific DNA binding transcription factors (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011851 [exp] 369 / 4e-129 AT3G24860 140 / 1e-39 Homeodomain-like superfamily protein (.1) Lus10000963 [exp] 95 / 5e-22 AT2G44730 124 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10040141 [exp] 93 / 2e-21 AT2G44730 123 / 1e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10011020 [exp] 78 / 3e-16 AT2G44730 123 / 7e-32 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10013350 [exp] 59 / 3e-11 AT3G24860 70 / 1e-15 Homeodomain-like superfamily protein (.1) Lus10024143 [exp] 58 / 3e-09 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 54 / 4e-08 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 51 / 9e-08 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10025404 [exp] 50 / 4e-07 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243300 [exp] 132 / 8e-37 AT3G24860 167 / 8e-50 Homeodomain-like superfamily protein (.1) Potri.002G139500 [exp] 94 / 5e-22 AT2G44730 252 / 3e-81 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.014G051200 [exp] 94 / 6e-22 AT2G44730 239 / 3e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G083800 [exp] 84 / 5e-18 AT2G44730 123 / 6e-31 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.001G150600 [exp] 81 / 4e-17 AT2G44730 114 / 6e-28 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G195300 [exp] 63 / 5e-11 AT3G54390 288 / 2e-96 sequence-specific DNA binding transcription factors (.1) Potri.001G028400 [exp] 62 / 5e-11 AT3G54390 297 / 6e-100 sequence-specific DNA binding transcription factors (.1) Potri.010G233500 [exp] 57 / 6e-09 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 56 / 1e-08 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.001G113600 [exp] 52 / 1e-07 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022789 pacid=23159965 polypeptide=Lus10022789 locus=Lus10022789.g ID=Lus10022789.BGIv1.0 annot-version=v1.0 ATGTCCTCCCCCTCCTCTCCACCACCGCCGCCGCTTCCCTTAACCGCCACCACGGCCGCGAAGAAACCCCAGCCAATCACATGGAGCCAGGAGGAGACCG TCCAGCTAATCCTAATCTACCAGCAAAAATGGCACGCCAACAACCGCCGCCACCTCAGAGCCCCGCAATGGGAAGAGATCTCCACCGCCGTCGCCGACCG CTGCGGCGGCCACAACGACGCTGACCCCCTCACCTCCGTCTCCCCCGAGCCCGCCAAATCGGGAATCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCGC CGCTACCGCTCTGAGCTCCCCCGCGCCTCTTCCTCTAATTGGCCCTTTTTCTCCCTCATGGATTCAATGGAGCGCGGCCCCATCTCCCCCCGCCCTCTGT CGGAGTACCACGGCGAGCCAGACGAAGAAGAGGAAGAAGAAGAAGAAGAAGGGGAAGAAGACTACCAAGCAGTCTATAATAACAAGTCGAGGAGCATTAA TCATATACTGAGAAAACCCAGCGTTGTGAACAGGTTTCCAGGTAACAATTACTCAGGGTTTCTTCTTCAGGCCGCCGCCGCCGCGGCGGAAGGCGGCGGA AAGAGGAAGAGAGGCGTTGAAGACGAAGGAAACAAAGAGGAGGAAGAGGGAATCGGGGGTTTGTTGGTGGTTGATGAGGTGAAGAAGCTGATAGAGAAGA TGAAAGGAGTGGAAAGGAAGAAGATGGAGATGGTGAAGGAAACAGAGAGGTGGAGGATGGAGATGGAGAAGCAGAGGATGGAGATGATGTTGGCTTCTCA GAGGAAGATTCTTCAGTTGATTGCTTCTTCTTCAGCTTCTGATGATGATAGTTAG
AA sequence Show only first row Show all	>Lus10022789 pacid=23159965 polypeptide=Lus10022789 locus=Lus10022789.g ID=Lus10022789.BGIv1.0 annot-version=v1.0 MSSPSSPPPPPLPLTATTAAKKPQPITWSQEETVQLILIYQQKWHANNRRHLRAPQWEEISTAVADRCGGHNDADPLTSVSPEPAKSGIQCRHKMEKLRR RYRSELPRASSSNWPFFSLMDSMERGPISPRPLSEYHGEPDEEEEEEEEEGEEDYQAVYNNKSRSINHILRKPSVVNRFPGNNYSGFLLQAAAAAAEGGG KRKRGVEDEGNKEEEEGIGGLLVVDEVKKLIEKMKGVERKKMEMVKETERWRMEMEKQRMEMMLASQRKILQLIASSSASDDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10022789 [exp]	0	1
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	3.9	0.8055
AT1G28360	AP2_ERF	AtERF12	ERF domain protein 12 (.1)		Lus10013993 [exp]	4.2	0.8060
AT1G51940			protein kinase family protein ...		Lus10004625 [exp]	4.5	0.7506
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	5.1	0.8066
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	6.0	0.7791
AT4G22570		APT3	adenine phosphoribosyl transfe...		Lus10024612 [exp]	9.2	0.7721
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003887 [exp]	9.2	0.7762
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	9.5	0.7738
AT1G78190			Trm112p-like protein (.1)		Lus10024634 [exp]	12.1	0.7104
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	12.8	0.7444

Compare expression of checked genes

Lus10022789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.