Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24840 608 / 0 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G55690 452 / 2e-152 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) AT4G39170 448 / 5e-151 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G39180 434 / 2e-146 ATSEC14, SEC14 ARABIDOPSIS THALIANA SECRETION 14, Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT2G21540 431 / 2e-145 ATSFH3 SEC14-like 3 (.1.2.3) AT2G21520 434 / 4e-145 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT4G36490 422 / 9e-142 ATSFH12 SEC14-like 12 (.1) AT2G18180 409 / 2e-136 Sec14p-like phosphatidylinositol transfer family protein (.1) AT1G75370 402 / 4e-133 Sec14p-like phosphatidylinositol transfer family protein (.1.2) AT1G19650 401 / 6e-133 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011853 [exp] 1021 / 0 AT3G24840 576 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10038176 [exp] 761 / 0 AT3G24840 551 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10025924 [exp] 697 / 0 AT3G24840 520 / 7e-180 Sec14p-like phosphatidylinositol transfer family protein (.1) Lus10023546 [exp] 437 / 1e-146 AT2G21520 924 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10042302 [exp] 436 / 2e-145 AT2G21520 910 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10026356 [exp] 434 / 1e-144 AT2G21520 925 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10008360 [exp] 431 / 1e-142 AT1G55690 668 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3) Lus10040432 [exp] 422 / 8e-141 AT2G21540 679 / 0.0 SEC14-like 3 (.1.2.3) Lus10040431 [exp] 422 / 1e-140 AT2G21520 921 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G243000 [exp] 725 / 0 AT3G24840 638 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1) Potri.005G119700 [exp] 462 / 4e-157 AT4G36490 726 / 0.0 SEC14-like 12 (.1) Potri.009G119500 [exp] 460 / 1e-155 AT2G21520 975 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.004G157700 [exp] 454 / 5e-153 AT2G21520 908 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.007G020300 [exp] 449 / 3e-152 AT4G36490 731 / 0.0 SEC14-like 12 (.1) Potri.004G157600 [exp] 425 / 2e-142 AT2G21540 709 / 0.0 SEC14-like 3 (.1.2.3) Potri.002G032600 [exp] 421 / 3e-140 AT2G21520 731 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.005G230500 [exp] 414 / 2e-137 AT2G21520 756 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Potri.009G119400 [exp] 413 / 2e-137 AT2G21540 729 / 0.0 SEC14-like 3 (.1.2.3) Potri.011G168300 [exp] 412 / 6e-137 AT1G55690 710 / 0.0 Sec14p-like phosphatidylinositol transfer family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF03765 [flax] [poplar] CRAL_TRIO_N CRAL/TRIO, N-terminal domain CL0512 [flax] [poplar] CRAL_TRIO PF00650 [flax] [poplar] CRAL_TRIO CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Lus10022790 pacid=23159942 polypeptide=Lus10022790 locus=Lus10022790.g ID=Lus10022790.BGIv1.0 annot-version=v1.0 ATGCCAGGAGATGTATCGGCGGCTTTCTATCAAGAGAGCGGGAAGGCTAAATCGTTGGATCTGGAGACGTCTGAGGACGAGAAGCAGCGGAGGGCGAGAG GGAGATCGTTGAGGAAGAAGGCGATGAGTGCTTCCAACAAGCTAACGCACAGCCTCAGGAAGCGTAGCAGGAGAGTGGCCGATTGCAGATTTGCGGCGAT CTCTGTTAATGATGTCAGGGATGCGAAGGAGGAGGCTGCTGTTATTGCGTTTCGTCAGGCGTTGGGTACGAAAGAGTTGCTACCTCGGCGGCATGATGAT TACCACACTCTTTTGAGGTTTCTCAAGGCGAGGAAGTTTGACCTTGACAAAACTATCCTCATGTGGTCAGAAATGCTTAACTGGAGAAAAGAAAACGGAA TAGATTCCATTCTGCAGGATTTTGTATTTGAGGAGTTCGAAGAGGTACAACGGTATTATCCTCATGGTTACCATGGTGTAGACAAAGGAGGCAGACCTGT TTATATTGAAAGACTGGGAAAGGTAGAACCTAACAAGCTAATGAATGTGACTACAGTAGACCGATTTTTGAAGTACCACGTTCAGGGATTTGAGAGGGCA TTTTCGGAGAAGTTCCCTGCATGCTCCATTGCAGCTAAGAGGCACATAGATTCTACTGTAACCATACTTGACGCACATGGATTGAATTGGATGAGCTTTG GCAAGGTTGCAAATGACCTTGTTATGCGCATGCAAAAAATTGACGGGGACAACTACCCTGAGACTATGCACCAGATGTTCATTGTTAATGCTGGACATGG GTTCAAACTGGTGTGGAACACAGTAAAAAGCTTTCTCGATCCCAAAACTACATCAAAGATTAATGTTTTAGGCAACAAGTTCCAAAGTAAGCTGTCGGAG ATCATTGACTCAAGTCAATTGCCAGACTTTCTTGGTGGAACCTGCCGCTGTGCTGATGAAGGCGGTTGTCTTAGGTCTGAGAAGGGACCATGGAAGGATC CAGAGATAATGAAACTGGTACACGCTGGAGACGCATTGTACCTAAAAACAATATCTTTTTCAGATGATGAGGAAATAGATATAAAGTTATTTGCCTCAAA GACATCAAGAAGTGAGATTACGACTGCTGATGCAAGCCCAGAATTGAGGCCAACTAGAGATTCCATTCAACAAGTCCCTTCAGATTTTATCTTACAAAGA GCAGCTGCTAATCAATCTACTCACAGCCGAACAATTGAACGCCATCTTGCCAGTGTCCAGGTCACTAATCAAACAAATACCACAACTGAGGTTGTTTCCG TAGAAAGTCCTGGCAGAATGCGATTTCTTGTTCACATCGTGGTTAAATTATTAGCTTGGATATACCTAGTTCTCCCAAGGATGCGGAGACTATTCCCAGC ACAGCACCCAAACAGACAATTACAGATCCAAACTCAGCCACTATTGGCAGATTCAAGTCCGCTGGAGTCACAAGTCTCGCAGGAATCCAACGAGAATAAG TTGAATCCGTGCTGGGAGAGGCTGCAACATTTGGAGAAAATGGTCAACGACCTCGTTAACAAACCCACTAACATCCCTCCTGAAAAAGAAGACATGATTC TCGACTCTTTAAGCCGGATTAGAGGCATAGAATACGATCTTCAGAAGACCAAGAAGGCACTGCTGGCAACAGCATCAAAACAAGTCGAGCTGGCGGAATT GCTTGAAAATCTAAAAGACTTCAGACCACCCGGTCCAAACTCTTGCTGGCCAAGACATTGCAAGCCGTATATCCCGGAATGA
AA sequence Show only first row Show all	>Lus10022790 pacid=23159942 polypeptide=Lus10022790 locus=Lus10022790.g ID=Lus10022790.BGIv1.0 annot-version=v1.0 MPGDVSAAFYQESGKAKSLDLETSEDEKQRRARGRSLRKKAMSASNKLTHSLRKRSRRVADCRFAAISVNDVRDAKEEAAVIAFRQALGTKELLPRRHDD YHTLLRFLKARKFDLDKTILMWSEMLNWRKENGIDSILQDFVFEEFEEVQRYYPHGYHGVDKGGRPVYIERLGKVEPNKLMNVTTVDRFLKYHVQGFERA FSEKFPACSIAAKRHIDSTVTILDAHGLNWMSFGKVANDLVMRMQKIDGDNYPETMHQMFIVNAGHGFKLVWNTVKSFLDPKTTSKINVLGNKFQSKLSE IIDSSQLPDFLGGTCRCADEGGCLRSEKGPWKDPEIMKLVHAGDALYLKTISFSDDEEIDIKLFASKTSRSEITTADASPELRPTRDSIQQVPSDFILQR AAANQSTHSRTIERHLASVQVTNQTNTTTEVVSVESPGRMRFLVHIVVKLLAWIYLVLPRMRRLFPAQHPNRQLQIQTQPLLADSSPLESQVSQESNENK LNPCWERLQHLEKMVNDLVNKPTNIPPEKEDMILDSLSRIRGIEYDLQKTKKALLATASKQVELAELLENLKDFRPPGPNSCWPRHCKPYIPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	0	1
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	1.0	0.9405
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	2.0	0.9243
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	2.4	0.8912
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	3.9	0.8587
AT5G13820		HPPBF-1, ATTBP1...	H-PROTEIN PROMOTE, telomeric D...		Lus10023406 [exp]	4.7	0.8489
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10030672 [exp]	6.9	0.8202
AT2G41830			Uncharacterized protein (.1)		Lus10042372 [exp]	8.1	0.8448
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10025924 [exp]	9.4	0.8532
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	10.4	0.8519
AT2G19950		GC1	golgin candidate 1 (.1.2)		Lus10012966 [exp]	10.6	0.8569

Compare expression of checked genes

Lus10022790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.