Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13630 184 / 2e-51 Protein of unknown function, DUF593 (.1.2) AT4G13160 102 / 3e-24 Protein of unknown function, DUF593 (.1) AT1G04890 96 / 4e-21 Protein of unknown function, DUF593 (.1) AT1G70750 69 / 4e-12 Protein of unknown function, DUF593 (.1) AT5G16720 69 / 5e-12 Protein of unknown function, DUF593 (.1) AT1G08800 66 / 4e-11 Protein of unknown function, DUF593 (.1.2) AT5G06560 61 / 9e-10 Protein of unknown function, DUF593 (.1) AT3G54740 60 / 2e-09 Protein of unknown function, DUF593 (.1.2) AT3G11850 55 / 9e-08 Protein of unknown function, DUF593 (.1.2) AT1G18990 53 / 3e-07 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011854 [exp] 842 / 0 AT4G13630 199 / 1e-56 Protein of unknown function, DUF593 (.1.2) Lus10007129 [exp] 107 / 2e-24 AT4G13630 160 / 7e-42 Protein of unknown function, DUF593 (.1.2) Lus10016673 [exp] 107 / 2e-24 AT4G13630 237 / 6e-70 Protein of unknown function, DUF593 (.1.2) Lus10004050 [exp] 78 / 9e-15 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10006566 [exp] 69 / 5e-12 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10015990 [exp] 68 / 5e-12 AT5G06560 467 / 8e-162 Protein of unknown function, DUF593 (.1) Lus10005527 [exp] 66 / 4e-11 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10012288 [exp] 65 / 5e-11 AT5G06560 464 / 2e-160 Protein of unknown function, DUF593 (.1) Lus10002289 [exp] 66 / 7e-11 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242900 [exp] 214 / 1e-61 AT4G13630 187 / 3e-51 Protein of unknown function, DUF593 (.1.2) Potri.017G055100 [exp] 107 / 3e-24 AT4G13630 211 / 2e-59 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 67 / 1e-11 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 67 / 1e-11 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.019G007802 [exp] 66 / 3e-11 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 66 / 5e-11 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 65 / 9e-11 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.004G087600 [exp] 64 / 2e-10 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1) Potri.017G129200 [exp] 64 / 2e-10 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 63 / 4e-10 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [flax] [poplar] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Lus10022791 pacid=23160030 polypeptide=Lus10022791 locus=Lus10022791.g ID=Lus10022791.BGIv1.0 annot-version=v1.0 ATGGGCCGAGTTAGGGAAGTTCATACCTGGAACTTAGCCGGACTAGCGGCGGCGTTTGTCGATCTAGCGATTACTTATACGCTTCTCTGTGTATCAGCTT TCGCCTTCGTTCCTTCCAAATTGCTGAGCGTTTTAGGGATTAGTTTTCCTTGCCCCTGCTGCGGCTCCTTTAACAGCAACGGCGGTGGCGAGTTCTGCTT GTATAGGTTGCTGATTAGTTGGCCGATTAAGAAGATCGTCTCCATTCAGGAGCTGGTTAAGAGTAGGTTTCCTTTTGATTTGGTCTGTTGTAACGATTAC GATTGCGGATCAGAGGCCAGATTGGGAAATGATGATGATGGTGGTGTCAAGGGGAGGAAGACTGCTGCGAGTCAGAAGAAGTTGTCTGCGGAGAGGAGGA GAAGGAGAGCTGCTGGAATCGTGTATCGTAAGCTTTTGTCCAGTGGTAATGGAGGTCAAATTGGTGAAAGGAGTGGCATTGATTCTGTGAATGGAGGTGA AGATGCTGTTCGTCATCCATTGGGACTCGGGAATGCTTCAAGTGCAAGTTTTGATCCTACATGTGAAAAGGGGAAATGCATCAGTGAGGCTTCATCTTCA ACTGTCGATAAATCTGTATGCATCGTGGAAGATGGGACAGATAGTGTGGCAAAGTTGATGAATTCTATCAGAAATCTGGAACAAGCACTGGAAGAAGAGA AGTCCGCACGTACCGCACTTTACCAAGAGCTGGAGAAGGAGAGGGCGGCTTCTGCAAGCGCAGCTGACGAAGCAATGGCCATGATATATCGGTTGCAGGA AGAGAAGGCGTCGCTGAAGATGGAGTTTAGGCAGAGTCGAAGGATAGTGGAGGAGAAGTTTGCTTACGACGAAGAGGAGATGAACATGCTGCAGGAGATT CTCATTAGGAGGGAGAGGGAGATCCATTACCTCGAGAAGGAAGTCGAAGAATTTCAGCAGATGAGCTCCCCAACGAATGGGGATATGAGCCCGCTCTCTC CGGTGCCGTGGAATGTTGACTTCAAGTCAGCTTATGAAGACGAAGTCGAAATAAGGGCGCATTTGTCGTCAATTTGCGAAAGAACCTCTAGTTCGTCTCC ACTGTCGAAGCATAAGGATTTACGTTTCGATCTAGCTCCTATCCCGGAAGCGTTTCCACAACCGAAAGAGGAATTTCCGGAAAAACCGGAAGGAAATGGT GAGAACGGGGATCTAGGAGATATCAGTATGTTTAGTTCCGTGGCTGACACGGAATTGACTGTACACGATGTTCATGTCATAGATGATGAGGCAATTCATA AGAATCATGGTAGTACTTGGAAAGGCATCGACTTGGAGAGTCCATCTGCCGTAGATAGCGAAAGATCAACGTTTGACCCGGAAGTCGGATGGCTCCAGGA AAGGCTGCGAATTGTTCAACAGGAGAGGGAGAACTTAACTTTCTCTGCTGAGAACAGGGAGAAATTCAGTACCCAGCTGAAAGTGATGGAAGAAATGTTA GCCAGCTTCGAGAGATCCAACAACACAAAGAACCAGTAA
AA sequence Show only first row Show all	>Lus10022791 pacid=23160030 polypeptide=Lus10022791 locus=Lus10022791.g ID=Lus10022791.BGIv1.0 annot-version=v1.0 MGRVREVHTWNLAGLAAAFVDLAITYTLLCVSAFAFVPSKLLSVLGISFPCPCCGSFNSNGGGEFCLYRLLISWPIKKIVSIQELVKSRFPFDLVCCNDY DCGSEARLGNDDDGGVKGRKTAASQKKLSAERRRRRAAGIVYRKLLSSGNGGQIGERSGIDSVNGGEDAVRHPLGLGNASSASFDPTCEKGKCISEASSS TVDKSVCIVEDGTDSVAKLMNSIRNLEQALEEEKSARTALYQELEKERAASASAADEAMAMIYRLQEEKASLKMEFRQSRRIVEEKFAYDEEEMNMLQEI LIRREREIHYLEKEVEEFQQMSSPTNGDMSPLSPVPWNVDFKSAYEDEVEIRAHLSSICERTSSSSPLSKHKDLRFDLAPIPEAFPQPKEEFPEKPEGNG ENGDLGDISMFSSVADTELTVHDVHVIDDEAIHKNHGSTWKGIDLESPSAVDSERSTFDPEVGWLQERLRIVQQERENLTFSAENREKFSTQLKVMEEML ASFERSNNTKNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13630			Protein of unknown function, D...		Lus10022791 [exp]	0	1
AT4G13630			Protein of unknown function, D...		Lus10011854 [exp]	1.4	0.9111
AT3G53490			unknown protein		Lus10003989 [exp]	3.5	0.9092
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10020771 [exp]	4.9	0.8829
AT2G35680			Phosphotyrosine protein phosph...		Lus10040174 [exp]	6.7	0.9073
AT1G26580			unknown protein		Lus10026655 [exp]	10.4	0.8525
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	10.7	0.8521
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10042086 [exp]	12.0	0.8699
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	12.6	0.8896
AT4G31170			Protein kinase superfamily pro...		Lus10020374 [exp]	13.4	0.8733
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	16.0	0.8908

Compare expression of checked genes

Lus10022791 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.