Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58430 736 / 0 ATEXO70B1 exocyst subunit exo70 family protein B1 (.1) AT1G07000 517 / 1e-176 ATEXO70B2 exocyst subunit exo70 family protein B2 (.1) AT1G72470 306 / 8e-95 ATEXO70D1 exocyst subunit exo70 family protein D1 (.1) AT3G14090 306 / 1e-94 ATEXO70D3 exocyst subunit exo70 family protein D3 (.1) AT5G50380 306 / 6e-94 ATEXO70F1 exocyst subunit exo70 family protein F1 (.1) AT1G54090 297 / 3e-91 ATEXO70D2 exocyst subunit exo70 family protein D2 (.1) AT5G13990 295 / 6e-90 ATEXO70C2 exocyst subunit exo70 family protein C2 (.1) AT5G13150 284 / 5e-86 ATEXO70C1 exocyst subunit exo70 family protein C1 (.1) AT5G03540 255 / 1e-76 ATEXO70A1 exocyst subunit exo70 family protein A1 (.1.2.3) AT5G52340 245 / 8e-72 ATEXO70A2 exocyst subunit exo70 family protein A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011861 [exp] 483 / 2e-168 AT5G58430 317 / 6e-105 exocyst subunit exo70 family protein B1 (.1) Lus10011860 [exp] 366 / 8e-123 AT5G58430 294 / 4e-96 exocyst subunit exo70 family protein B1 (.1) Lus10008126 [exp] 314 / 2e-97 AT1G72470 862 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10022459 [exp] 305 / 1e-94 AT5G50380 749 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10013163 [exp] 299 / 4e-94 AT1G72470 740 / 0.0 exocyst subunit exo70 family protein D1 (.1) Lus10016764 [exp] 300 / 9e-92 AT5G50380 807 / 0.0 exocyst subunit exo70 family protein F1 (.1) Lus10011334 [exp] 276 / 2e-83 AT5G13150 541 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10003142 [exp] 273 / 6e-82 AT5G13150 548 / 0.0 exocyst subunit exo70 family protein C1 (.1) Lus10041536 [exp] 274 / 5e-81 AT5G13990 608 / 0.0 exocyst subunit exo70 family protein C2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G152900 [exp] 664 / 0 AT5G58430 781 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.019G124000 [exp] 659 / 0 AT5G58430 726 / 0.0 exocyst subunit exo70 family protein B1 (.1) Potri.015G094800 [exp] 332 / 3e-104 AT5G50380 785 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.001G166400 [exp] 331 / 7e-104 AT1G72470 822 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.012G097100 [exp] 330 / 3e-103 AT5G50380 754 / 0.0 exocyst subunit exo70 family protein F1 (.1) Potri.003G068700 [exp] 324 / 2e-101 AT1G72470 810 / 0.0 exocyst subunit exo70 family protein D1 (.1) Potri.001G060700 [exp] 301 / 2e-92 AT5G13150 658 / 0.0 exocyst subunit exo70 family protein C1 (.1) Potri.001G325600 [exp] 298 / 1e-90 AT5G13990 662 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.017G068000 [exp] 291 / 5e-88 AT5G13990 640 / 0.0 exocyst subunit exo70 family protein C2 (.1) Potri.017G093966 [exp] 265 / 6e-79 AT3G29400 597 / 0.0 exocyst subunit exo70 family protein E1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF03081 [flax] [poplar] Exo70 Exo70 exocyst complex subunit
Representative CDS sequence Show only first row Show all	>Lus10022795 pacid=23160050 polypeptide=Lus10022795 locus=Lus10022795.g ID=Lus10022795.BGIv1.0 annot-version=v1.0 ATGGCTGACAACGGCGAGGAGAAGGTCATCGCCATGGCCCGCCACATCGCCAAGACCTTAGGCCACAACGAGTCCATGGCCGACGACATCCTCCAGATCT TCTCCAACTTCGACAACCGATTCTCCCGTGACAAGCTCTCCGACCAGATCGCAGCAGCCGCAGCAGGCGGCGGCGGATCTGACGTCAGAGCTCTCGACCA TGCTCTCAGGTCACTCGTCCTCCAGATCTCTCAGTACGTCGTCTCCGAGCAACCCATCTGGTCGGATTTGGCTGATTCGTCTGCTTTTCTTGATACAGTC GATGAGCTGACTGCTACTATTCGTGATTGGACTCCGATGGCGGCGGGGGATAAGGCTGTGGAAGCTTCGTTGCTGCAGTCGCTGGACCGCCAGATCTCTC AGTACGTTGTCTCCGAGCAGCCCATCTGGTCGGATTTGGCGGATTCGTCTGCTTTTCTTGATACAGTCGATGAGCTGACTGCTACTATTCGTGATTGGAC TCCGATGGCGGCGGGGGATAAGGCTGTGGAAGCTTCGTTGCTGCGTGCTGATGACTTGATGCAGCAGGCGGTTTTCCGTCTGGAGGAGGAGTTCCGGATG TTGATGGAGCGAGGGGGGGAGTCGTTTGAGGTGAATCGAAGGAGGCGGCGGAATAACAACGGTGAGTCGCCTGCTGACTGGTTTGACTCCGATGAGGAGG AGGATGAAGAGGAAGAAGAAGACGATGCTCCTTCGACGACGAACGGAGATTTCAATGATTATATCCCCGTGGCGCAGCCTTTAACGGACTACGACGTGGT CATCGATGCGCTTCCGTCGGGGACGATTAACGACCTCCACGAGATTGCCAAGCGGATGGTGGCGGCAGGGTTCGCCAAGGAGTGTTCGCATGTCTACAGC AGCTGCCGGAGGGAGTTTCTCGAAGAGAGCGTCAGTAGGTTAGGGTTACAGCAGAAGCTGAGCATCGAGGAGGTTCAGAAGATGTCGTGGCAAGATCTGG AGGACGAAATCGAGAAGTGGATCAAAGCGGCGAACGTTCTGCTCCGAATCCTCTTCCCTAGCGAGCGCCGCCTCTGTGACCGAGTCTTCTTCGGATTCAC CTCCGCTGCCGATCTCTCGTTCATGGAGGTATGCCGTGGATCGACGATCCAGATCCTGAACTTCGCCGAAGGCATAGCGATCGGTAGCCGATCTCCCGAG CGGCTGGGGGGGGTTGTGGTAGTGTTTGTGGGGGTGTGGGGGTTGGGTCCTGATCTCCTACATACCGATCAGTACTGTTTGGTTCTTAGAAATGAAGCGG TAGCAATTTGGAATAGGCTCAGAGTAGCTATTAGAGGGATGTTCATGGAGTTAGAGAATCTAATCCGGCGAGATCCAGCTAAGGATCCAGTTCCCGGCGG AGGACTTCATCCGATCACACGGTATGTGATGAACTATCTCCTTGCTGCTTGCAGATCCAGAGATTCTCTGGAGCAGGTGGTTGAGGACAGTGTTAATGGC AGCGGCATTGGCTCCAAGGATTCTTCATCTTCTCCATTATCAGTTCAAATGGAGTGGATCATGGAGCTGCTGGAGAGCAATTTGGAGATGAAGTCGAAGA TTTACAACGATCCAGCATTGTCGTCTGTGTTCATGATGAACAATGAGAGGTATATTGTGAAGAAGGTAAAAGACATCGATCCGAAGAACAGTCAGTTAGG TGCATTACTAGGAGAGGATTGGATCAGGAAACACACTGCTAAAGTGAAGCAATTCCATTTGAGCTACCAGCGAAGCTCCTGGAATAAGATATTGACAGTG TTGAAGATTGATAGTAACTCCCCTGGAAGTTCTAACAAGCCTATGTCCATGAAGGAGAAGATCAAGCTGTTTAATTCTCTGTTTGAAGATGTTTACAAGA CTCAATCTCATTGGATCATATTTGATGAACAACTGAAGAAGGATATAAAGATCTCGTTGTCCAACCTTCTACTGCCTGTTTATGGAAGCTTCGTCGGCCG TTTCCAGAATTCGCCTGATGCTGGAAGGCATGTGGATAAGTACATTAAGTACAGCTCTGAAGATGTCGAGTTTAGGATTAATCAGTTGTTCCAGGGTGGC ACTGGCAGGAAATGA
AA sequence Show only first row Show all	>Lus10022795 pacid=23160050 polypeptide=Lus10022795 locus=Lus10022795.g ID=Lus10022795.BGIv1.0 annot-version=v1.0 MADNGEEKVIAMARHIAKTLGHNESMADDILQIFSNFDNRFSRDKLSDQIAAAAAGGGGSDVRALDHALRSLVLQISQYVVSEQPIWSDLADSSAFLDTV DELTATIRDWTPMAAGDKAVEASLLQSLDRQISQYVVSEQPIWSDLADSSAFLDTVDELTATIRDWTPMAAGDKAVEASLLRADDLMQQAVFRLEEEFRM LMERGGESFEVNRRRRRNNNGESPADWFDSDEEEDEEEEEDDAPSTTNGDFNDYIPVAQPLTDYDVVIDALPSGTINDLHEIAKRMVAAGFAKECSHVYS SCRREFLEESVSRLGLQQKLSIEEVQKMSWQDLEDEIEKWIKAANVLLRILFPSERRLCDRVFFGFTSAADLSFMEVCRGSTIQILNFAEGIAIGSRSPE RLGGVVVVFVGVWGLGPDLLHTDQYCLVLRNEAVAIWNRLRVAIRGMFMELENLIRRDPAKDPVPGGGLHPITRYVMNYLLAACRSRDSLEQVVEDSVNG SGIGSKDSSSSPLSVQMEWIMELLESNLEMKSKIYNDPALSSVFMMNNERYIVKKVKDIDPKNSQLGALLGEDWIRKHTAKVKQFHLSYQRSSWNKILTV LKIDSNSPGSSNKPMSMKEKIKLFNSLFEDVYKTQSHWIIFDEQLKKDIKISLSNLLLPVYGSFVGRFQNSPDAGRHVDKYIKYSSEDVEFRINQLFQGG TGRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10022795 [exp]	0	1
AT3G52240			unknown protein		Lus10043425 [exp]	4.2	0.7865
AT4G34950			Major facilitator superfamily ...		Lus10025053 [exp]	5.7	0.8381
AT3G14090		ATEXO70D3	exocyst subunit exo70 family p...		Lus10001113 [exp]	6.8	0.7638
AT3G01400			ARM repeat superfamily protein...		Lus10018684 [exp]	8.0	0.8054
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10008702 [exp]	11.5	0.8010
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	13.3	0.8027
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	21.0	0.7608
AT3G55420			unknown protein		Lus10040295 [exp]	21.7	0.7849
AT4G24060	DOF	AtDof4,6	Dof-type zinc finger DNA-bindi...		Lus10003208 [exp]	22.6	0.7836
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011860 [exp]	23.5	0.7272

Compare expression of checked genes

Lus10022795 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.