Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32710 76 / 5e-16 ICK7, ACK2, KRP4 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) AT5G48820 72 / 6e-15 ICK6, KRP3 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) AT3G24810 44 / 2e-05 ICK3, KRP5 kip-related protein 5, Cyclin-dependent kinase inhibitor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011862 [exp] 268 / 8e-91 AT5G48820 146 / 2e-43 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Lus10043139 [exp] 81 / 6e-18 AT2G32710 143 / 2e-41 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2) Lus10032611 [exp] 75 / 9e-16 AT2G32710 139 / 1e-39 KIP-RELATED PROTEIN 4, INTERACTORS OF CDC2 KINASE 7, CYCLIN-DEPENDENT KINASE INHIBITOR 2, Cyclin-dependent kinase inhibitor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242100 [exp] 93 / 7e-23 AT5G48820 177 / 6e-56 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.001G314000 [exp] 86 / 4e-20 AT5G48820 131 / 2e-37 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2) Potri.017G054000 [exp] 76 / 2e-16 AT5G48820 127 / 3e-36 KIP-RELATED PROTEIN 3, inhibitor/interactor with cyclin-dependent kinase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022796 pacid=23159917 polypeptide=Lus10022796 locus=Lus10022796.g ID=Lus10022796.BGIv1.0 annot-version=v1.0 ATGGGCAAGTACATGAAGAAGACCAAATCGGCGGTGGCCATGGAGCTCTCCTCTTCCACCTCCTCCACCGCCGCTGAAAGCTCCGGCGTCCGCACCCGCG CAAAAACCCTAGCACTCCAGAAGCTCCAGCAACAACGGTCCCCTTCTCCGACCAAGATCGCTATTCCTCTTGCCGACGAATCGTCCTTCTCTTACCTCCA GCTCCGTAGCCGCCGCCTCGAGAAGCCCCCTCTGCGGTCGGACGAAGAAATTAGCAGCTCCAGGAGAGGATTGATGAAGTGTAAAGCTCCGAGTTCCAGG CTGGCTAGAGTGAGCTCTGAGGCTGTAAGGGAAGAAGGGAATCTGTTTGGTACTTCTGGCGGTGGCGAGGATGGCTATTTTGGTGAGAACTACTGCTCTG AGTTTGAAGCCAGGGACAGGAGCACCAGGGAGAGCAGGCTGTGTAGTCTGATAAAGCGCTCCGATGATGTCAGCGCTGGGACACCCGGCTCGACAACGAG GCAAGGGGTGATGGCTAGTAACCGTCGAGTTAGTAGTAATGAAACGTTGAGCTTCCCAACTGTGCAAGAAATGGATGACTTCTTCTCCCGTGCAGAAGAG CGGCAGCAGAGACTGTTCATAGAGAAGCCGCTACGAGTGGATCCAAATAACTCCTTGACTCCAGCATCATCTGACATTGAAACTGAGTCTGGAATTTTTC TTCCAGTGGAGCTTCTGATTCAGATAGATGTTCTTGCAACTGTGGCTGATGAATAA
AA sequence Show only first row Show all	>Lus10022796 pacid=23159917 polypeptide=Lus10022796 locus=Lus10022796.g ID=Lus10022796.BGIv1.0 annot-version=v1.0 MGKYMKKTKSAVAMELSSSTSSTAAESSGVRTRAKTLALQKLQQQRSPSPTKIAIPLADESSFSYLQLRSRRLEKPPLRSDEEISSSRRGLMKCKAPSSR LARVSSEAVREEGNLFGTSGGGEDGYFGENYCSEFEARDRSTRESRLCSLIKRSDDVSAGTPGSTTRQGVMASNRRVSSNETLSFPTVQEMDDFFSRAEE RQQRLFIEKPLRVDPNNSLTPASSDIETESGIFLPVELLIQIDVLATVADE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Lus10022796 [exp]	0	1
					Lus10017557 [exp]	6.2	0.8707
AT5G26594		ARR24	response regulator 24 (.1)		Lus10005407 [exp]	9.6	0.8445
					Lus10003840 [exp]	12.5	0.8381
AT4G37790	HD	HAT22	Homeobox-leucine zipper protei...		Lus10027633 [exp]	13.8	0.7761
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	14.4	0.8381
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Lus10007882 [exp]	15.7	0.7872
					Lus10022573 [exp]	16.1	0.8381
					Lus10006661 [exp]	17.7	0.8381
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10009378 [exp]	19.1	0.8381
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10038264 [exp]	20.4	0.8381

Compare expression of checked genes

Lus10022796 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.