Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32700 837 / 0 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT4G32551 416 / 7e-133 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G41500 96 / 2e-20 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 92 / 9e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 84 / 3e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 80 / 2e-15 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 78 / 1e-14 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G67320 75 / 9e-14 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G21390 76 / 1e-13 Coatomer, alpha subunit (.1) AT5G25150 75 / 1e-13 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011863 [exp] 1318 / 0 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10043135 [exp] 857 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 850 / 0 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10017754 [exp] 362 / 1e-112 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10033066 [exp] 356 / 1e-110 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10006916 [exp] 100 / 1e-22 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 100 / 1e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 97 / 2e-20 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 90 / 2e-18 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241800 [exp] 1074 / 0 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.001G049400 [exp] 872 / 0 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G178600 [exp] 850 / 0 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.018G033300 [exp] 386 / 4e-121 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.006G248100 [exp] 379 / 4e-119 AT4G32551 996 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.004G045601 [exp] 332 / 1e-103 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G051900 [exp] 96 / 2e-21 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 93 / 2e-19 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.007G009500 [exp] 87 / 2e-18 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 85 / 1e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0561 [flax] [poplar] LisH PF08513 [flax] [poplar] LisH LisH
Representative CDS sequence Show only first row Show all	>Lus10022797 pacid=23160015 polypeptide=Lus10022797 locus=Lus10022797.g ID=Lus10022797.BGIv1.0 annot-version=v1.0 ATGGCACAAAGCAATTGGGAAGCAGATAAGATGCTCGACGTGTATATTCATGATTACCTTTTGAAGCGGAAATTGCATAACTCTGCTAAAGCTTTCATGA CCGAAGGGAAGGTTGCTACAGATCCAGTAGCAATTGATGCACCCGGAGGTTTTCTATTTGAATGGTGGTCTGTGTTCTGGGACATATTTATTGCGAGAAC AAATGAGAAGCATTCTGAAGCTGCTGCAGCTTATATAGAGGCACAGCATACAAAGGCAAGGGAGCAACAACAGCTGCAAATGCAACAATTGCAATTGTTG CAGCAAAGGAGTGCGCAACTGCAACGACGGGATCCAAGTCATCCTGCTCTTGCTGGTTCTATAAGCGCTGGAAACTCTGAGGGAATAATTGGGCAGCCAT CAGCAAGTGTCTTGGCCATGAAATTATATGAAGAGCGGATGAAACACCCCCATTCTTTGGACTCAGACACATCACCAGTGCTCCTTGATGGCAATAGGAT GGGTCTTGTCAAATCTGGAACCAATCATCAAGGTCAAATGGTACATGGTAATACAGGGAATGTGTCATCTGCTTTGCAGCAAATCCAGCCACGAGCACCT CTAACCCCAGACATCAAACCTGAAATTAACTTGGGTCCGACTCAGAAAAGCTTATCAATGGATCCATCATCTATATATGGGCAGGCAATATTGCACTCTA AATCTGGATTAGGAGGAAATCAAGGAGCAAGTGGTCTTCCATTGAAGGGTTGGCCTTTGACTGGAATTGACCAATTGCGTCCAAATATGGGCATACAGAT GCAAAAAGCCAATATCCAGCCACAAAATCAGTATCTCCTAGCTTCCCAACAACAGGTCCTTGCACAAGCTCAAGCACAAAGTAACCTTGGAAATTCAACT AATTATGGTGACATTGACCCTCGAAGGTTGAGTCAGCTACCACGAGGCAACTTCAACCCAAAAGATGGCCAGGCGACAAGAAATGATGGACCAATTTACT CCCCTGTGCAATCAAGCTCACCAAAGAACAATAGGAAAAGAAAACAAAACTCTTCCTCTGGACCTGCTAATAGCACTGGTACAGGAAACACAGTCGGTCC TCCCGGTTCTCCTCCATCAACTCATACTCCTGGTGACGGAATGGCCCCGAGTAATCTGCAACAGGTTAACAGTGCACCGAAAAACATGATGATGTATGGT CAAGAGGCCACTGCGGGTCTTATATCTTCCAATATGCTGGATGACATTGAAAAGTTTGGAGATATTGCTTCTCTTGATGATAATATAGAACAGTTCCTGA ACGGAGATGGGAGGGAATTATATGGAGCTTTAAGACAAAGCCCTGCCGAGCATCCAAAAGAGCCTTCTAAAGGATTCACTTTTGGAGAGGTTGGTTGCAT AAGGACCAGAAATAGCAAGGTCACTTGCTGTCACTTCTCTTCAGATGGTAAACTTCTGGCGAGTGCCGGTCATGATAAAAAGGTTGTCCTGTGGAATATG GATACTCTGCAAACCCAGAGCACGCCCGAGGAGCACAAATATGTCATCACTGATATCCGTTTCAGGCCCAATTCATCTCAGCTTGCAACATCATCAGTCG ACAAGTCTGTTCGGTTGTGGGATGCTTCTGATCCAAGCTATTGCCTACATGCCTGTACCGGCCACAACTCCCCAATCATGTCCCTAGATTTCCACCCTAA GAAAACCGATCTTTTCTGTTTTAGTGACAATGACAACGAGATTCGCTACTGGAATATCAATCCTTTCTCATGCACTCGCATATCCAAGGGAGGCAACGCC CAAGTGAGATTTCAACCAGGAATGGGCCAACTACTGGCTGCAGCTTCAGACAAAGTAGTGTCCATCTTCAATGTAGAAACAGACAGGCTAACGCACGCGT TCCAGGGTCACGAGGATATGGTAAACTACATTTCTTGGGATGCGAACGGGGAGCTCCTTGCCTCAGTTAGCCAGAACTTGGTGAAAGTTTGGTCACTTGC CTCGGGGGACTACATTCAGGAGTTCAACTCGAATGGGAACCAGCTCCATTCATGCGTTTTCCATCCCAACTACCCATCTCTCCTGGTCATTGGTGGCATC TCTTCGCTGGAGCTGTGGAACATGGCGGAGAACAAGAGCATGACGATTGCGGCACACGATAACATTGTGTCGGCGCTAGCTCAGTCATCGGTCAACGGGA TGGTGGCCTCTGCCAGTCACGACTGCTCCGTGAAGCTCTGGAAATAA
AA sequence Show only first row Show all	>Lus10022797 pacid=23160015 polypeptide=Lus10022797 locus=Lus10022797.g ID=Lus10022797.BGIv1.0 annot-version=v1.0 MAQSNWEADKMLDVYIHDYLLKRKLHNSAKAFMTEGKVATDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAAAYIEAQHTKAREQQQLQMQQLQLL QQRSAQLQRRDPSHPALAGSISAGNSEGIIGQPSASVLAMKLYEERMKHPHSLDSDTSPVLLDGNRMGLVKSGTNHQGQMVHGNTGNVSSALQQIQPRAP LTPDIKPEINLGPTQKSLSMDPSSIYGQAILHSKSGLGGNQGASGLPLKGWPLTGIDQLRPNMGIQMQKANIQPQNQYLLASQQQVLAQAQAQSNLGNST NYGDIDPRRLSQLPRGNFNPKDGQATRNDGPIYSPVQSSSPKNNRKRKQNSSSGPANSTGTGNTVGPPGSPPSTHTPGDGMAPSNLQQVNSAPKNMMMYG QEATAGLISSNMLDDIEKFGDIASLDDNIEQFLNGDGRELYGALRQSPAEHPKEPSKGFTFGEVGCIRTRNSKVTCCHFSSDGKLLASAGHDKKVVLWNM DTLQTQSTPEEHKYVITDIRFRPNSSQLATSSVDKSVRLWDASDPSYCLHACTGHNSPIMSLDFHPKKTDLFCFSDNDNEIRYWNINPFSCTRISKGGNA QVRFQPGMGQLLAAASDKVVSIFNVETDRLTHAFQGHEDMVNYISWDANGELLASVSQNLVKVWSLASGDYIQEFNSNGNQLHSCVFHPNYPSLLVIGGI SSLELWNMAENKSMTIAAHDNIVSALAQSSVNGMVASASHDCSVKLWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	0	1
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10011863 [exp]	1.0	0.9524
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	5.3	0.8556
AT1G07200			Double Clp-N motif-containing ...		Lus10028281 [exp]	6.3	0.8819
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10012781 [exp]	8.3	0.8192
AT2G20100	bHLH		basic helix-loop-helix (bHLH) ...		Lus10023669 [exp]	9.0	0.8605
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10036812 [exp]	10.7	0.8104
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	11.0	0.8519
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021656 [exp]	12.8	0.7954
AT2G40130			Double Clp-N motif-containing ...		Lus10040206 [exp]	13.4	0.8500
AT3G24630			unknown protein		Lus10011100 [exp]	13.8	0.8254

Compare expression of checked genes

Lus10022797 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.