Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07080 297 / 1e-98 EamA-like transporter family (.1) AT4G32140 66 / 6e-12 EamA-like transporter family (.1) AT3G59340 51 / 5e-07 Eukaryotic protein of unknown function (DUF914) (.1) AT3G59310 45 / 3e-05 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) AT3G59330 42 / 0.0002 Eukaryotic protein of unknown function (DUF914) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011864 [exp] 464 / 2e-164 AT3G07080 453 / 1e-158 EamA-like transporter family (.1) Lus10006194 [exp] 72 / 7e-14 AT4G32140 610 / 0.0 EamA-like transporter family (.1) Lus10041032 [exp] 71 / 1e-13 AT4G32140 607 / 0.0 EamA-like transporter family (.1) Lus10042422 [exp] 62 / 2e-10 AT4G32140 390 / 3e-130 EamA-like transporter family (.1) Lus10026249 [exp] 45 / 5e-05 AT4G32140 320 / 3e-107 EamA-like transporter family (.1) Lus10026744 [exp] 43 / 0.0002 AT3G59310 451 / 4e-160 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Lus10004060 [exp] 42 / 0.0004 AT3G59310 305 / 5e-103 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G189500 [exp] 327 / 4e-110 AT3G07080 477 / 2e-167 EamA-like transporter family (.1) Potri.018G024700 [exp] 74 / 2e-14 AT4G32140 581 / 0.0 EamA-like transporter family (.1) Potri.006G266400 [exp] 70 / 3e-13 AT4G32140 397 / 6e-137 EamA-like transporter family (.1) Potri.006G257000 [exp] 69 / 5e-13 AT4G32140 566 / 0.0 EamA-like transporter family (.1) Potri.014G151800 [exp] 46 / 2e-05 AT3G59310 417 / 3e-146 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2) Potri.002G230600 [exp] 45 / 5e-05 AT3G59310 436 / 8e-154 Eukaryotic protein of unknown function (DUF914) (.1), Eukaryotic protein of unknown function (DUF914) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF06027 [flax] [poplar] SLC35F Solute carrier family 35
Representative CDS sequence Show only first row Show all	>Lus10022798 pacid=23159921 polypeptide=Lus10022798 locus=Lus10022798.g ID=Lus10022798.BGIv1.0 annot-version=v1.0 ATGATTGTGGAGCATGAGGAAGTAGAGGAGGATCAAGAGAGCGGGGAAGGTCTCGATTCGAGATTGGATACCATCATATCTTACGAGACCGAACCGATTC CGATTGAAGACGATGATGGTGACCTTGTTACTGGTGGAGTTGACTCTAAAGGGAGATGGACACGAAGGAAGGTGGCGAAAGTTAGTCTGCTCATTTGCCC CTTTTGGTTTCTTGCTCAGCTTACGTTCAACTTGTCCCTCAAGTATACTACAGTAACGTCGAACACGATTTTGAGCAGTGCATCGAGTCTGTTTACCTTT CTGGTGTCGTTAGCCTTCTTGGGTGAAAAGTTTACTTGGGTTAAGTTTGTAAGTGTCCTTCTGTGCATGGCTGGGACTGTTATTGTCAGCTTGGGTGACT CGGAATCCGGGCTGAGTGCAGTTGCTTCGAACCCTGTTCTTGGAGACATTTTTGCTCTGGTATCGGCTGGTTTTTATGCTGTGTATATTACGCTCATTCG TATAAAGCTGCCGGAAGATGAAGAAAAAGATGGACGTGCTAGTATGGCTCAGTTCCTTGGATTTCTCGGTCTTTTCAACCTCGTCTTATTCCTGCCGGTT GCGATTATTCTCCATCTGGTTAATCTGGAGCCCTTTAATGCACTTACATGGAATCAGCTTGGACTTGTTGTTGGAAAAGTCCGTAGATCATCCCCTTTTT TAGTGTACTTGCTACTCTTTACGGCCCCACACCCACCCCACACGCCTCCCCCCCCCGCCGGTCTCACGATCCAGGTCCCATTGGCGGCCATTGTCGACAC GATAACGGGCAACGCGCCTCGTCTGATGGATTACCTCGGAGCCGTAGCTGTGATGATCGGGTTTGCCGGAATCAACATCCCGTCGGACGAATCCAAAGAT GAAGAAGGGCCAGTAACAGAAAACGAAAATGCTAGACTAGAAGCAACACAAGGGAATTGA
AA sequence Show only first row Show all	>Lus10022798 pacid=23159921 polypeptide=Lus10022798 locus=Lus10022798.g ID=Lus10022798.BGIv1.0 annot-version=v1.0 MIVEHEEVEEDQESGEGLDSRLDTIISYETEPIPIEDDDGDLVTGGVDSKGRWTRRKVAKVSLLICPFWFLAQLTFNLSLKYTTVTSNTILSSASSLFTF LVSLAFLGEKFTWVKFVSVLLCMAGTVIVSLGDSESGLSAVASNPVLGDIFALVSAGFYAVYITLIRIKLPEDEEKDGRASMAQFLGFLGLFNLVLFLPV AIILHLVNLEPFNALTWNQLGLVVGKVRRSSPFLVYLLLFTAPHPPHTPPPPAGLTIQVPLAAIVDTITGNAPRLMDYLGAVAVMIGFAGINIPSDESKD EEGPVTENENARLEATQGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07080			EamA-like transporter family (...		Lus10022798 [exp]	0	1
AT3G07080			EamA-like transporter family (...		Lus10011864 [exp]	1.0	0.8970
AT5G52180			unknown protein		Lus10015101 [exp]	6.3	0.8759
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	10.0	0.8737
AT3G53420		PIP2;1, PIP2A	PLASMA MEMBRANE INTRINSIC PROT...		Lus10036531 [exp]	11.5	0.8895
AT3G48680		AtCAL2, GAMMACA...	gamma carbonic anhydrase-like ...		Lus10031847 [exp]	11.6	0.8710
AT2G37585			Core-2/I-branching beta-1,6-N-...		Lus10024404 [exp]	12.0	0.8905
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	13.0	0.8935
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Lus10032349 [exp]	14.0	0.8711
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10017926 [exp]	14.7	0.8809
AT5G35160			Endomembrane protein 70 protei...		Lus10027831 [exp]	21.2	0.8554

Compare expression of checked genes

Lus10022798 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.