Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07070 483 / 5e-170 Protein kinase superfamily protein (.1) AT3G24790 448 / 5e-157 Protein kinase superfamily protein (.1) AT5G13160 427 / 5e-147 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 428 / 8e-147 Protein kinase superfamily protein (.1.2) AT4G13190 416 / 6e-144 Protein kinase superfamily protein (.1) AT5G02800 406 / 5e-140 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G20530 390 / 1e-133 Protein kinase superfamily protein (.1) AT5G16500 384 / 8e-128 Protein kinase superfamily protein (.1) AT3G02810 379 / 7e-127 Protein kinase superfamily protein (.1) AT1G20650 368 / 3e-125 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011866 [exp] 683 / 0 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 429 / 1e-147 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10033966 [exp] 429 / 4e-147 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 425 / 1e-145 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 420 / 2e-145 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 418 / 2e-144 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023473 [exp] 416 / 2e-143 AT5G18610 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 409 / 8e-141 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10043050 [exp] 406 / 6e-140 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241600 [exp] 484 / 3e-170 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 432 / 3e-149 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 429 / 2e-147 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 427 / 4e-147 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 424 / 4e-147 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 427 / 2e-146 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 422 / 3e-146 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 418 / 9e-145 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.019G051600 [exp] 415 / 3e-141 AT3G07070 474 / 4e-165 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 409 / 1e-140 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022799 pacid=23159987 polypeptide=Lus10022799 locus=Lus10022799.g ID=Lus10022799.BGIv1.0 annot-version=v1.0 ATGAGTTGCTTCGCTTGCTTTTCATCATCATCTCATGATAAGAAATCCGCCAGGAGAAACGCCAAGAGACCAAATTCGCCTTCTGTCAAGGAAAACCAGG TCGCCCAGCAACCCCGTTCTGCGAATCCGAAACCTGAAGGGTACAAGACGGAAACAGCGTCGTCGTCTCCGAACAATATTGCAGCGGAGACGTTCACGTT CAGGGAGCTGGCGACGGCGACCAAGAACTTCAGGCAGGAATGTCTGATCGGAGAAGGCGGGTTCGGGAGAGTTTACAAGGGACGGCTCGACAGGACTAAC CAGGTTGTGGCTGTGAAGCAACTTGACAGGAATGGGATGCAAGGGAACAGGGAGTTCCTGGTGGAGGTGTTGATGCTGAGTCTGTTGCATCACCGGAATC TGGTGAACCTGATTGGATATTGTGCTGATGGTGATCAGAGGCTGTTGGTTTATGAGTACATGTGCAAAGGATCCCTTGAAGATCACCTTCTAGATCTGCC GCCGGGGAGGAAGTCGCTGGATTGGTTCACGAGGATGAAGATAGCATTTGGCGCGGCAAAAGGGTTGGAGTATCTGCACGACAAGGCGAATCCTCCGGTG ATATACCGGGACCTGAAGTCGTCGAACATTCTCCTCGACGCAGAGTTTACGGCCAAGCTCTCCGACTTCGGGCTGGCTAAGCTGGGACCCACCGGAGATA AGACCCACGTCTCGTCCAGGGTGATGGGTACCTACGGATACTGCGCGCCGGAGTACCAGAGGACCGGTCAGCTGACCGTGAAATCCGACGTCTACAGCTT CGGTGTCGTTCTCTTGGAGTTGATCTCCGGCAGAAGAGTCATCGACACCAGTCGCCCTTCCCACCAGCAGAACCTCGTCGCTTGGATACTGCAAAAATTC AATGACCTTATTTCTTCCTTTTTCTTTCCTCAAACAGGCACAACCGTTGTTCAAGGACCCGAGCGGTTACCGGGAGCTAGCGGACCCCCTTCTCAAGGGC GATTTCCCCATCAGGGGGTTAAATCAGGCCGTGGCAGTGTCGGCGATGTGTCTGGGGGGGGGGTGCGACAGAGGGGCGCCCCGCCGGGCCGGCCGCTGAT GACCGAGGTCGTCAGCGCCCTTAGCTTCTTGGGGACGCCGGCGGACGTTGTGCCAGCTTCTTCTCCGGGAGAAAAGAACGGCGACAGCGGGGAGATGAGG AAGCAAAAGGGGATGGTGGATGAGGAGAACGCGCAAGAGCGGAAGAGAGCGGTGGCGGAGGCGATTGAGTGGGGAGCTAATTCGAGGCAAGTGGCGGCGG CGCAGGGCGGAGCAGCTTCTTCTCAAATTTGA
AA sequence Show only first row Show all	>Lus10022799 pacid=23159987 polypeptide=Lus10022799 locus=Lus10022799.g ID=Lus10022799.BGIv1.0 annot-version=v1.0 MSCFACFSSSSHDKKSARRNAKRPNSPSVKENQVAQQPRSANPKPEGYKTETASSSPNNIAAETFTFRELATATKNFRQECLIGEGGFGRVYKGRLDRTN QVVAVKQLDRNGMQGNREFLVEVLMLSLLHHRNLVNLIGYCADGDQRLLVYEYMCKGSLEDHLLDLPPGRKSLDWFTRMKIAFGAAKGLEYLHDKANPPV IYRDLKSSNILLDAEFTAKLSDFGLAKLGPTGDKTHVSSRVMGTYGYCAPEYQRTGQLTVKSDVYSFGVVLLELISGRRVIDTSRPSHQQNLVAWILQKF NDLISSFFFPQTGTTVVQGPERLPGASGPPSQGRFPHQGVKSGRGSVGDVSGGGVRQRGAPPGRPLMTEVVSALSFLGTPADVVPASSPGEKNGDSGEMR KQKGMVDEENAQERKRAVAEAIEWGANSRQVAAAQGGAASSQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07070			Protein kinase superfamily pro...		Lus10022799 [exp]	0	1
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10032903 [exp]	4.5	0.7279
					Lus10021106 [exp]	9.8	0.6659
AT3G27970			Exonuclease family protein (.1...		Lus10022230 [exp]	10.9	0.6857
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10023432 [exp]	15.0	0.6670
AT5G53820			Late embryogenesis abundant pr...		Lus10003056 [exp]	17.0	0.6593
AT1G51990			O-methyltransferase family pro...		Lus10005268 [exp]	23.4	0.6337
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10040055 [exp]	27.7	0.6445
AT1G05577			Domain of unknown function (DU...		Lus10037468 [exp]	27.7	0.6381
					Lus10034849 [exp]	36.8	0.6157
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10000168 [exp]	42.0	0.6015

Compare expression of checked genes

Lus10022799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.