Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07060 627 / 0 EMB1974 embryo defective 1974, NHL domain-containing protein (.1) AT1G56500 79 / 1e-14 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011867 [exp] 1414 / 0 AT3G07060 621 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Lus10020699 [exp] 76 / 1e-13 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 75 / 2e-13 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241366 [exp] 618 / 0 AT3G07060 584 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Potri.013G007800 [exp] 76 / 6e-14 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022801 pacid=23159979 polypeptide=Lus10022801 locus=Lus10022801.g ID=Lus10022801.BGIv1.0 annot-version=v1.0 ATGATCCAGAGATGTGGAAGATTCAGACAAATTTCACGGATTTTACCGCGTCTTTCGTCAGGAAATTGCTTACTGCAGTATGGAGAAGCAAGAGATTACT TTACCTCTTCCACTTCAGTCACTCCTTTTCGTTCATTTCTAAGTAAGAACACTAGCCCAGAAAAATTACAGCGGATATTCACCTCTCAAAGGTTCTCAGC AGCATCAGATGCATCCACCGAGGTTTCTTCACCTATAAAAGACGGCATGGTCTCTGTTATTCGAACCACTTTCGACGACCTTCAAGGCCCGAATCATGTC TGGTTAAATGTGGATGAAAGAGATAAACCCATCTTAATGAAAAATGGAGCATTTCTAGTTCTTGCTGGACAGCTCTTACAAGATTCTGAGATAGTAGCTA TGCTTGAAAAGGTCAAATTGCTAAAGCAGAGATTCTCCGAGCTTTGTGTTGTAGGTTTTCATGCTGGAAGTTCAGTTGACCTTGCTGCTGATCAAGCACG TCTAGTTGACTTGATAGCGAAAGAATACGTCACCTTCCCTATCTTGTTGTGCAATAAGAATTTCTCAGAGATGGAACATGGAGCTTGCTACGTTTTGTTC GGAGACTCTGAGGATCCACTTATTTATCATGAGAAGGATCTGGATCTTGGAGTTCTTTATACAGCCGTCGAGGAGTTGTGTGTCCGGCAGAAACAGAATT CCGATGACAGGAACTCGAGTTTGGAATGTTTGAAAGGAACTTGGGTGAAACAAGACACTCCAAGAGAACCACTTGCAGCTTCATATCTGCAAAATTTGCT TCTCTACTTCCCAGGATGTGTATCTGCAGATGTATCTGACGGTCGCCTATTCTTTTCCGACAGCAATAATCACCGTATCATCATATCTGACAACAACGGA GAAATTCTGGATTGTATTGGTTCTTCTCCAGGCTTTGAGGATGGAGACTTCGAGAATGCCAAGGTTTTGCGTCCTGGAGCTTCCTTTTATGACGACGCTG AGGATTATCTATATTTCGTTGATTCAGAGAACCATGCGGTCAGGAGAGCTGACTTGGAGGGAAGAGTTCTGGATACAGTATATCCTCCTCCTATTGTCAC TGTCAGTATAGAAAAGGATAGCCTATGGAGTAAGATTTCTAGTAAATTCGGTTTCGGAAGGACGACTGAACCCAAGTCTGAAGAATTCAATTCCAACTCT TTTCTGTTCCCTTGGCACATTTTGAAGTCAGAAGAAGATCACTGCTTTATCATTAACCGCAGCTTTGAGACTCTATGGGTAATGGATTTGTCTTCTGGAG AGATCAAAGATGTAATGAAAGGATTTCGAAAGATTATGGACACCTGCGGAAATTTGATCGACGAAAAATTATCTCTCTTGAAAGAAATTCCAAATGATTG GTTGGAACAGCAGACTGATGCCAATCGGACGAGTAAAGAGATCCCTTACGCTACGCTCTTATCGTCCGTGGCAACTTGTAACAACCATGTGTTCGTCCGC GATAATAATGCGAAGAAAGTGCTGAAACTGAATAGAGAATCAAGAGCTTGCTCCATGTATCAGTTCAGAAACGTTGGGGTCCTCGGACTACCTTACTGGT GTGCGCGTGTTATTGAAAAAGTATATTCCATTACGCCGAGTCATGAATCATGGACAGATCACCTTCAGCAATTCAGCCAATTACCAGGCAGAACCGACAT AGAGATAATGGTAGACATTCCTACGGATACTGAGCTCGTCGAGCCATTGCATGAAGGATGCATCTGGCGCCAGGCAAGAGGAGCCGCTACCGAAGTCTCG GGAACGAAAACCGAAATAGACTCCTCCGAGAAGGCTGGTGTTGCCCAGAAGTGGTACGACGAACTAGATAATCTGGCGTTTTCGTCACCTGAGCCGGAGC CAAGTGTCGAAGAAGAAGATGCTAGCACGTCTGTAGATGATGAGACTTACAAGGATGGAAAAATTCACATTCATTGTTCCATCAATACGAGCCCCGGCTT CAGTGAGGTGGTTGTATTAGCTCCACTGTACCTGAGACTTAGAAGAGATGCCGATGTAGAAGAAAACAAGCAAGAGAAATATGCCGCAAGGATTGCTGAT ATTCTCAAATGGGGGAGATCCAGTGAGGCGATGCGAGATTTGTGCATTCAGGTCTTGTTAAGATCAGGGACGGATATACGAGACCTCGTGTTTGTGAAAC CTCTACACATCAGGATAAGACTCGAATGCCCTGATCACCCTAAAGCACCTGATAATACCAAAGATATCATATTGACCAAGTCTTCCGTTGATGTCAATGT ATCACTTTAA
AA sequence Show only first row Show all	>Lus10022801 pacid=23159979 polypeptide=Lus10022801 locus=Lus10022801.g ID=Lus10022801.BGIv1.0 annot-version=v1.0 MIQRCGRFRQISRILPRLSSGNCLLQYGEARDYFTSSTSVTPFRSFLSKNTSPEKLQRIFTSQRFSAASDASTEVSSPIKDGMVSVIRTTFDDLQGPNHV WLNVDERDKPILMKNGAFLVLAGQLLQDSEIVAMLEKVKLLKQRFSELCVVGFHAGSSVDLAADQARLVDLIAKEYVTFPILLCNKNFSEMEHGACYVLF GDSEDPLIYHEKDLDLGVLYTAVEELCVRQKQNSDDRNSSLECLKGTWVKQDTPREPLAASYLQNLLLYFPGCVSADVSDGRLFFSDSNNHRIIISDNNG EILDCIGSSPGFEDGDFENAKVLRPGASFYDDAEDYLYFVDSENHAVRRADLEGRVLDTVYPPPIVTVSIEKDSLWSKISSKFGFGRTTEPKSEEFNSNS FLFPWHILKSEEDHCFIINRSFETLWVMDLSSGEIKDVMKGFRKIMDTCGNLIDEKLSLLKEIPNDWLEQQTDANRTSKEIPYATLLSSVATCNNHVFVR DNNAKKVLKLNRESRACSMYQFRNVGVLGLPYWCARVIEKVYSITPSHESWTDHLQQFSQLPGRTDIEIMVDIPTDTELVEPLHEGCIWRQARGAATEVS GTKTEIDSSEKAGVAQKWYDELDNLAFSSPEPEPSVEEEDASTSVDDETYKDGKIHIHCSINTSPGFSEVVVLAPLYLRLRRDADVEENKQEKYAARIAD ILKWGRSSEAMRDLCIQVLLRSGTDIRDLVFVKPLHIRIRLECPDHPKAPDNTKDIILTKSSVDVNVSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10022801 [exp]	0	1
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	1.0	0.7763
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	9.4	0.6869
AT3G22430			unknown protein		Lus10006278 [exp]	21.1	0.6851
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	37.7	0.6757
AT1G56350			Peptide chain release factor 2...		Lus10010922 [exp]	38.8	0.6155
AT5G39680		EMB2744	EMBRYO DEFECTIVE 2744, Pentatr...		Lus10001483 [exp]	41.8	0.6244
					Lus10017083 [exp]	43.2	0.5572
AT1G61670			Lung seven transmembrane recep...		Lus10012872 [exp]	51.4	0.6231
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	52.4	0.5957
AT5G54910			DEA(D/H)-box RNA helicase fami...		Lus10012172 [exp]	58.4	0.6474

Compare expression of checked genes

Lus10022801 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.