Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24770 37 / 0.0005 CLE41 CLAVATA3/ESR-RELATED 41 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011868 [exp] 78 / 1e-19 AT3G24770 39 / 1e-04 CLAVATA3/ESR-RELATED 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G241300 [exp] 40 / 5e-05 AT3G24770 52 / 1e-09 CLAVATA3/ESR-RELATED 41 (.1) Potri.012G019400 [exp] 37 / 0.0007 AT3G24770 54 / 2e-10 CLAVATA3/ESR-RELATED 41 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022802 pacid=23160045 polypeptide=Lus10022802 locus=Lus10022802.g ID=Lus10022802.BGIv1.0 annot-version=v1.0 ATGGATATTGAACCCTTGTGGGAACTTGGGGGGTGGTTTCTTCTTTCTTCTTCTCCGACTCGGTACTCCGATTGCATGGCTACAATCTCGAAACCTCCTC ATTGCCGCGGTCGAAACCTTGTCTCCCTCTCCTTCCTGCTCTCCCTCTTCCTCCTCCTCCTCCTCTTCACACCTTCAACTCCAACAACACAACCTTCTCC GATTTCAGAATCCTCCTCCACCACCACCACAACAACAACCTTACACCATAAACAAACGAAAGAAAGGGCGAGGAGATCGGACTACTTTGGAGCCGATGAG CACGAGGTTCCTAGCGGTCCGAACCCCATCTCCAACTAG
AA sequence Show only first row Show all	>Lus10022802 pacid=23160045 polypeptide=Lus10022802 locus=Lus10022802.g ID=Lus10022802.BGIv1.0 annot-version=v1.0 MDIEPLWELGGWFLLSSSPTRYSDCMATISKPPHCRGRNLVSLSFLLSLFLLLLLFTPSTPTTQPSPISESSSTTTTTTTLHHKQTKERARRSDYFGADE HEVPSGPNPISN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022802 [exp]	0	1
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Lus10011868 [exp]	2.2	0.9340
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	6.5	0.8879
					Lus10025868 [exp]	11.6	0.9075
AT1G60783			unknown protein		Lus10026693 [exp]	12.1	0.8870
AT2G36650			unknown protein		Lus10014389 [exp]	13.7	0.8980
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	14.1	0.8931
					Lus10028522 [exp]	16.1	0.8751
AT4G05400			copper ion binding (.1.2)		Lus10035454 [exp]	16.2	0.8150
					Lus10022166 [exp]	16.4	0.8121
AT2G32830		PHT1;5, PHT5	PHOSPHATE TRANSPORTER 5, phosp...		Lus10022547 [exp]	17.9	0.8520

Compare expression of checked genes

Lus10022802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.