Plant FIBer expression Database

Lus10022803 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13200 84 / 1e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011869
[exp]
173 / 1e-55 AT4G13200 116 / 3e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G241000
[exp]
76 / 5e-17 AT4G13200 88 / 1e-21 unknown protein
PFAM info
Representative CDS sequence
>Lus10022803 pacid=23159896 polypeptide=Lus10022803 locus=Lus10022803.g ID=Lus10022803.BGIv1.0 annot-version=v1.0
ATGAGTCTTGTTACGTCTTTTCCCCCGCAACTACTCACCCCCTTTCCGCCTCAGTCGAATCCACGCTTCAAACCAACTGCCGGCACCGCCGGCGCAATTA
TCCCACAGAACCACCGCCGGCTCTCTTGCTCGCCGGTGTCCAAAACAGTAATCAATCATACCCAGCTCACTCAGAGCTTTCGAGAGCTCCGTAGAGCTAG
TCTTGTATGCAGCAGCAGTGGCCCCAATTCAACCGATTCAACTTCAGGAGAGAATGAGAGCAAGAGTGTCTTGGATGCATTCTTCCTGGGGAAGGCTTTG
GCAGAAGTGCTGAACGAGAGGATTGAATCTGCAGTAGGGGAGGTTCTGAGTACTATTGGAAAGCTCCAATCTGAGCAGCAGAAGCAAATCCAAAGCTTCC
AGGAAGATGTGGTTGAAAGAGCCAAGAGGGCCAAGCAAGGAGCAGCACAGACTACATCAGTAGTAGAAACATCAGCAGCAACAACTGATAAGGCTGAAGA
AACAGCAACCAGCACAGTTGTCTAA
AA sequence
>Lus10022803 pacid=23159896 polypeptide=Lus10022803 locus=Lus10022803.g ID=Lus10022803.BGIv1.0 annot-version=v1.0
MSLVTSFPPQLLTPFPPQSNPRFKPTAGTAGAIIPQNHRRLSCSPVSKTVINHTQLTQSFRELRRASLVCSSSGPNSTDSTSGENESKSVLDAFFLGKAL
AEVLNERIESAVGEVLSTIGKLQSEQQKQIQSFQEDVVERAKRAKQGAAQTTSVVETSAATTDKAEETATSTVV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G13200 unknown protein Lus10022803
[exp]
0 1
AT5G42850 Thioredoxin superfamily protei... Lus10037477
[exp]
1.0 0.8768
AT2G17350 unknown protein Lus10022984
[exp]
2.0 0.8180
AT4G13200 unknown protein Lus10011869
[exp]
4.6 0.8258
AT5G17060 ATARFB1B ADP-ribosylation factor B1B (.... Lus10020392
[exp]
5.5 0.8384
AT3G29090 PME31, ATPME31 A. THALIANA PECTIN METHYLESTER... Lus10014338
[exp]
8.1 0.8044
AT2G34690 ACD11 ACCELERATED CELL DEATH 11, Gly... Lus10023267
[exp]
8.8 0.7831
AT3G01910 AT-SO, ATSO, SO... sulfite oxidase (.1.2.3) Lus10041561
[exp]
8.9 0.7938
AT1G52870 Peroxisomal membrane 22 kDa (M... Lus10032655
[exp]
8.9 0.7665
AT1G18680 HNH endonuclease domain-contai... Lus10015728
[exp]
9.0 0.7961
AT3G51030 ATTRX1, ATTRXH1 ARABIDOPSIS THALIANA THIOREDOX... Lus10024293
[exp]
9.2 0.7813

Lus10022803 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.