Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33120 365 / 3e-130 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT2G32670 363 / 3e-128 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04760 360 / 6e-128 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT1G04750 359 / 1e-127 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT4G15780 309 / 7e-108 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT2G33110 285 / 2e-98 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT3G54300 274 / 1e-93 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT5G11150 155 / 2e-47 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 155 / 2e-47 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 152 / 6e-46 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011870 [exp] 398 / 5e-143 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 391 / 3e-140 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 387 / 1e-138 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 356 / 2e-126 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 353 / 3e-125 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10036203 [exp] 352 / 1e-124 AT1G04760 367 / 1e-130 vesicle-associated membrane protein 726 (.1) Lus10038342 [exp] 350 / 4e-124 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 347 / 6e-123 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 300 / 2e-104 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G177700 [exp] 378 / 4e-135 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 360 / 5e-128 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 360 / 8e-128 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 353 / 2e-125 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.012G119600 [exp] 353 / 4e-125 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 303 / 2e-105 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.010G239900 [exp] 273 / 3e-93 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.008G019400 [exp] 269 / 1e-91 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 152 / 4e-46 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.018G025800 [exp] 150 / 4e-45 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10022804 pacid=23160003 polypeptide=Lus10022804 locus=Lus10022804.g ID=Lus10022804.BGIv1.0 annot-version=v1.0 ATGGGGCAACAATCGCTGATCTATAGCTTCGTCGCTCGTGGGACGGTGATCTTGGCCGAGTTCACGGAGTTCACCGGCAACTTCACAAGTATAGCTGCTC AGTGCCTCCAGAAACTCCCCGCTTCCAACAACAAGTTCACTTACAATTGCGATGGCCACACCTTCAACTACCTCGTCGATGAAGGCTTCACTTATTGCGT GGTTGCGGTGGAGTCTGTTGGGCGTCAGGTTCCTATTGCTTTCCTTGAACGGGTGAAAGAAGAGTTCTCCAAGAAGTATGGTGGAGGAAAAGCTGCAACA GCTGTTTCCCAGAGCTTGAACAAAGAATTCGGTCCCAAGTTGAAGGAGCAGATGCAATATTGCGTGGATCACCCTGAGGAGGTTAGCAAGCTTGCTAAAG TGAAAGCTCAGGTCTCTGAAGTGAAAGGAGTTATGATGGACAACATAGAGAAGGTTCTTGATCGTGGAGAGAAAATCGAGATCCTCGTGGACAAAACAGA AAACCTTAGGTCTCAGGCACAAGATTTCAGGCAGCAGGGGACGAAGATGAGGAGAAAGATGTGGTTCCAGAACATGAAGATCAAGCTGATAGTACTGGCA ATCATAATCGCGCTGATCCTCATCATCGTATTATCGATCTGCGGAGGCTTCAATTGTAACAAGTAA
AA sequence Show only first row Show all	>Lus10022804 pacid=23160003 polypeptide=Lus10022804 locus=Lus10022804.g ID=Lus10022804.BGIv1.0 annot-version=v1.0 MGQQSLIYSFVARGTVILAEFTEFTGNFTSIAAQCLQKLPASNNKFTYNCDGHTFNYLVDEGFTYCVVAVESVGRQVPIAFLERVKEEFSKKYGGGKAAT AVSQSLNKEFGPKLKEQMQYCVDHPEEVSKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIEILVDKTENLRSQAQDFRQQGTKMRRKMWFQNMKIKLIVLA IIIALILIIVLSICGGFNCNK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10040912 [exp]	1.0	0.9208
AT1G07040			unknown protein		Lus10030795 [exp]	2.8	0.8969
AT3G49800			BSD domain-containing protein ...		Lus10011556 [exp]	4.2	0.8837
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	4.6	0.8899
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	4.9	0.8852
AT5G20030			Plant Tudor-like RNA-binding p...		Lus10003091 [exp]	5.2	0.8565
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	5.5	0.8933
AT1G43130		LCV2	like COV 2 (.1)		Lus10018869 [exp]	5.8	0.9030
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	6.7	0.8776
AT1G43130		LCV2	like COV 2 (.1)		Lus10028564 [exp]	7.7	0.8996

Compare expression of checked genes

Lus10022804 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.