Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05740 577 / 0 ATEGY2 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) AT5G48850 382 / 6e-127 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 348 / 7e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G51280 291 / 4e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 227 / 5e-66 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 213 / 1e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G35220 139 / 2e-34 EGY1 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) AT5G22794 96 / 5e-22 unknown protein AT1G17870 75 / 1e-13 ATEGY3 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1) AT5G35210 63 / 8e-10 metalloendopeptidases;zinc ion binding;DNA binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011873 [exp] 859 / 0 AT5G05740 648 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10011872 [exp] 553 / 0 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 381 / 2e-126 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 377 / 8e-125 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 281 / 1e-85 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 281 / 1e-85 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 280 / 2e-85 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041886 [exp] 280 / 3e-85 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 253 / 1e-74 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G066500 [exp] 614 / 0 AT5G05740 610 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Potri.002G240700 [exp] 456 / 2e-155 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 399 / 2e-133 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 380 / 3e-126 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G056500 [exp] 289 / 1e-88 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G112100 [exp] 283 / 2e-86 AT3G51280 595 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 264 / 3e-77 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 257 / 1e-74 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G064700 [exp] 137 / 6e-34 AT5G35220 766 / 0.0 ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 1, Peptidase M50 family protein (.1) Potri.001G289700 [exp] 89 / 3e-18 AT1G17870 755 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF02163 [flax] [poplar] Peptidase_M50 Peptidase family M50
Representative CDS sequence Show only first row Show all	>Lus10022806 pacid=23159969 polypeptide=Lus10022806 locus=Lus10022806.g ID=Lus10022806.BGIv1.0 annot-version=v1.0 ATGAGCAGCACTTCGACTATCTTTCGCGGCAGTTGTTGTCCATTGTTGCTTTACTCGCCGCCGGGTAGCACCTCTTGTTCTTACGATCTTCGGTCTCTGC CATTGCCAGAGACATTCCGTACTTCCTGCCGACTGAGACGGTATCACTCCAGAGATTTCAAGTTTTGCATAGTGTCTAAATTTCATGGGAAGAAAAGAAG AATAGTTTGTAGAGCTACGGAGACTGAACCTGATAGTAATGACGATAAGGAAAACGATGAACACAAAGCAAGTGAGGGAGAGGCAGCACCTAGGGTAGAT TCATTAGAACAACAAGATCCCCAGCCAGATTCTCCGCCTACAGTGTTGAACCAAGTTACCACTTTCGATGGGGAAACTAAAGCTGAAGGTGGAACCGGGG ATGCTGAGGAAGTAGAAGTTGCTTCGGGATCCCCTCTCCCGGGAATGAAGCTGCAGCAGCTGGATGAATCATTTAGGATTCCAAAGGAGACAATCGACAT CCTCAAGGACCAAGTGTTCGGGTTTGATACTTTCTTCGTCACAAGTCAGGAGCCCTATCAGGGTGGAGTCTTGTTCAAAGGAAACCTCCGTGGGCAAGCT GCAAAAAGCTATGATAAAATCGCTAACAGATTGAAGAATAAATTTGGCAACGAATACAAGGTTTTCCTTCTCACTAATCCAGAGGATGATAAACCAGTTG CAGTAGTTGTTCCAAGCAAGACTATGCAACCAGAGACAACACCCGTTCCTGAGTGGTTTGCAGCAGGGGCTTTTGGACTGGTTGCAGTTTTTACGCTACT TCTTAGAAATGTGCCCCAACTGCAGTCCAACTTACTATCAACCTTTGAAAATCCCGAATTGATATATAATGGCCTTCCTGGAGCTCTTGTCACTGCACTT GTTCTCGGGGTACACGAGCTTGGCCACATATTGGTTGCTAAAGATATTGGGATTAAGCTTGGAGTTCCATACTTTGTTCCAAGTTGGCAGATAGGCTCCT TTGGTGCTATCACAAGGATAAGGAACATTGTTGCCAAACGTGAAGATCTTCTGAAGGTTGCAGCTGCTGGCCCTCTAGCAGGCTTTTCCTTGGGTCTTGT TCTTCTTCTGCTGGGATTCTTCTTACCACCCAGTGATGGAATTGGTATCATTGTGGATCCTACCGTCTTTCATGAATCATTTCTTGCCGGTGGTATCGCC AAGCTCCTTCTAGGAGAAGCACTCAAGGAAGGGACTCCAATATCCATCAACCCGCTCGTGATATGGGCATGGTCCGGACTTCTAATAAACGCCATCAATA GCATCCCTGCCGGAGAGCTCGACGGAGGAAGAATCTCTTTCGCCATATGGGGAAGAAAGATCTCATCTCGATTAACGGGTGCCTCTGTCGTCCTACTGGG GCTATCGTCGTTGTTTAACGACATCGCCTTCTACTGGGTTGTTCTGATATTCTTCTTGCAGAGGGGACCGATTGCTCCGATCTCGGAAGAGGTATCGGAG CCCGAGGACAAGTACATTTACCTTGGAGTATTGGTTTTGATGTTGGGGCTGTCTCAAACCAGACCCAAAAGGAATCAAGTAAGTTGGAGATCAGAAGCTC AAGCTATGGGGACTACTAGCAAGGATGAACTAGTTCATATTCTTCACAAGGTTCCTTCTGGTGATGGCCCTTATGTCAAAGCCAAGCATGCTCAGTTGGT GGAGAAGGATGGCGAGGCAGCGATAGTATGGTTTTGGAAGGCGATAAACGCAGGAGATCGAGTCGACAGTGCACTCAAAGACATGGCCGTCGTCATGAGG CAACTCAACCGAAGTGAGGAAGCCATTGAAGCCATCAAGTCCTTCCGACGACGCTGCTCGAAGCAGGCTCAGGACTCCCTCGACAATGTCCTCATCGACT TGTACAAGAAATGTGGGAAGGTGGATGAGCAGATAGAGCTTCTGAAGAGGAAGCTGAGATTAATATACTTGGGCGAGACCTTCAATGGCAGACCCACCAA AACTGCTCGCTCTCACGGCAAGAAATTCCAGGTTTCGGTTCAGCAAGAGACCTCCCGATTACTGGGGAACTTGGGATGGGCCTACATGCAGAAGCCCAAC TACATAGCAGCGGAGGTGGTGTACAAGAAGGCTCAAATGATCGATCCAGACGCCAACAAGGCCTGCAATTTGGGCCTGTGCTTGATGAAGCAGGCCCGGT ACGATGAGGGCCATTCAGTTCTGGAAGAAGTCTCTCAGTGTAGGCTCCCTGGCTCAGACGACACTCGGGCGAGGAATCGTGCTGAGGAGTTGATCGGAGA GATCAGACTACGCCAGTTGCCTCAAGATACGATGGGCCTGATGGGCTTGGACCTGGACGATGAAGATTTCATGAATGGGCTTGAGGAGTTCATGAGAAGA TGGGCCAGGTCAAGGTCCAAGAGGCTACCCATCTTTGAAGAGATCTCTTCGCTCAGAGACCAATTAGCATGTTGA
AA sequence Show only first row Show all	>Lus10022806 pacid=23159969 polypeptide=Lus10022806 locus=Lus10022806.g ID=Lus10022806.BGIv1.0 annot-version=v1.0 MSSTSTIFRGSCCPLLLYSPPGSTSCSYDLRSLPLPETFRTSCRLRRYHSRDFKFCIVSKFHGKKRRIVCRATETEPDSNDDKENDEHKASEGEAAPRVD SLEQQDPQPDSPPTVLNQVTTFDGETKAEGGTGDAEEVEVASGSPLPGMKLQQLDESFRIPKETIDILKDQVFGFDTFFVTSQEPYQGGVLFKGNLRGQA AKSYDKIANRLKNKFGNEYKVFLLTNPEDDKPVAVVVPSKTMQPETTPVPEWFAAGAFGLVAVFTLLLRNVPQLQSNLLSTFENPELIYNGLPGALVTAL VLGVHELGHILVAKDIGIKLGVPYFVPSWQIGSFGAITRIRNIVAKREDLLKVAAAGPLAGFSLGLVLLLLGFFLPPSDGIGIIVDPTVFHESFLAGGIA KLLLGEALKEGTPISINPLVIWAWSGLLINAINSIPAGELDGGRISFAIWGRKISSRLTGASVVLLGLSSLFNDIAFYWVVLIFFLQRGPIAPISEEVSE PEDKYIYLGVLVLMLGLSQTRPKRNQVSWRSEAQAMGTTSKDELVHILHKVPSGDGPYVKAKHAQLVEKDGEAAIVWFWKAINAGDRVDSALKDMAVVMR QLNRSEEAIEAIKSFRRRCSKQAQDSLDNVLIDLYKKCGKVDEQIELLKRKLRLIYLGETFNGRPTKTARSHGKKFQVSVQQETSRLLGNLGWAYMQKPN YIAAEVVYKKAQMIDPDANKACNLGLCLMKQARYDEGHSVLEEVSQCRLPGSDDTRARNRAEELIGEIRLRQLPQDTMGLMGLDLDDEDFMNGLEEFMRR WARSRSKRLPIFEEISSLRDQLAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Lus10022806 [exp]	0	1
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10027649 [exp]	7.7	0.8485
AT4G27600		NARA5	GENES NECESSARY FOR THE ACHIE...		Lus10026867 [exp]	11.3	0.8652
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	16.5	0.8415
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10007565 [exp]	18.1	0.8472
AT4G34830		PDE346, MRL1	PIGMENT DEFECTIVE 346, MATURAT...		Lus10012180 [exp]	22.1	0.8406
AT3G50685			unknown protein		Lus10026029 [exp]	31.0	0.8345
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Lus10037265 [exp]	36.9	0.8368
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	38.4	0.8383
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10028909 [exp]	39.7	0.8335
AT3G57180		BPG2	BRASSINAZOLE\(BRZ\) INSENSITIV...		Lus10035420 [exp]	43.5	0.8189

Compare expression of checked genes

Lus10022806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.