Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07030 210 / 4e-64 Alba DNA/RNA-binding protein (.1) AT1G76010 171 / 8e-50 Alba DNA/RNA-binding protein (.1) AT1G20220 161 / 2e-46 Alba DNA/RNA-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011874 [exp] 280 / 3e-89 AT3G07030 239 / 2e-73 Alba DNA/RNA-binding protein (.1) Lus10017255 [exp] 179 / 7e-54 AT1G76010 251 / 2e-82 Alba DNA/RNA-binding protein (.1) Lus10005615 [exp] 174 / 7e-52 AT1G76010 264 / 3e-87 Alba DNA/RNA-binding protein (.1) Lus10034549 [exp] 175 / 2e-51 AT1G76010 276 / 5e-91 Alba DNA/RNA-binding protein (.1) Lus10021844 [exp] 174 / 3e-51 AT1G76010 280 / 1e-92 Alba DNA/RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G240601 [exp] 239 / 1e-76 AT3G07030 199 / 3e-61 Alba DNA/RNA-binding protein (.1) Potri.002G066100 [exp] 179 / 1e-53 AT1G20220 200 / 1e-62 Alba DNA/RNA-binding protein (.1) Potri.005G244300 [exp] 177 / 2e-53 AT1G76010 221 / 7e-71 Alba DNA/RNA-binding protein (.1) Potri.005G194600 [exp] 175 / 3e-52 AT1G20220 194 / 6e-61 Alba DNA/RNA-binding protein (.1) Potri.002G017600 [exp] 167 / 3e-49 AT1G76010 216 / 3e-68 Alba DNA/RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0441 [flax] [poplar] AlbA PF01918 [flax] [poplar] Alba Alba
Representative CDS sequence Show only first row Show all	>Lus10022807 pacid=23159934 polypeptide=Lus10022807 locus=Lus10022807.g ID=Lus10022807.BGIv1.0 annot-version=v1.0 ATGGATAGGTACACCAGAGTCGAGAAGCCGAAGCCGGAGTCGCCAATAAACGAGAACGAGATCCGAATCACCTCCTCCGGTCCCGTCAGAAACTACATCA GCTACGCCACTTCCCTTCTCCAGGACAAACATGCAAAGGAGATTGTCTTGAAGGCCATGGGGCAGGCAATTAGCAAGACAGTTTCTATTGCTGAGAGCAT AAAGAGAAGAAATCCCCGCTTGCATCAAGACACTGCCATAAGCTCAGTTAGCATCACTGATGTCTGGGAACCTATTGAGGAAGGACTTGTACCTGTGGAA CAGACCCGCCAAGTTTCCATGATCACAATTACCTTATCATTTAGTGAGTTAGATAAGAACTCTCCTGGGTATCAAGCTCCACAAGCTGGTGAACAATCCA AACCACAATATCAGCAGCAGCCACAACAGTATAGACAAGTCCGAGGTCCATATTATGAAGATTCATATGGCGGCGGTCGCGGACGTGGTGGCAGAGGGAG AGGGAGGGGAAGAGGTCGAAACTGGGGCAGGGGTGGATATGGATATGGAAACTTTCCGGAAAACTATCAAGGAAACTATCAGGGAAACTATCAGAGGGGT TATGAAGAGAATGGTGGTTATTCAAACTGGGGACGTGGTGGTGGAAGAGGCAGAAACTGGGGTTATCGAGGTGCTGGTTATGAAGGAGGGGGCAGAGGTG GCGATTATGAAGGCCGAGGTAGTGGATATGAAGGAGGCAGAGGTGGCGGATACGAAGGAGGCAGAGGTGGATACGAAGGAGGCCGAGGTGGATACGAAGG AGGCCGAGGTGGATATGGTGGAGGCCGAGGTGGCGGGTACGAAGGAGGCAGAGGTGGCGGGTACGAAGGAGGCAGAGATGGCGGGTATGAAGGAGGCAGG GGTGGATATGGAGGACGAAGAGGCGGTGGGTTTGAAGGAGGAAGAGGTGGATATGGAGGAGGGAGAGGAGGCGGTTACGAAGGTGGCAACAGAGGTGATG GATACGAAGGAGGCAGAATGAGTGGATATCGAGGCGGATACGAAGGAAACAGAGGAGGCGGTTACGAAGGTGGCAGAGGAGGGAGAGGAGGCGGCAGGAG CTATGGTCGTGGCCGAGGAAGGGGTGGTGGCCGCACAGGGGGTGGAGGCGACAACCAAGCATGA
AA sequence Show only first row Show all	>Lus10022807 pacid=23159934 polypeptide=Lus10022807 locus=Lus10022807.g ID=Lus10022807.BGIv1.0 annot-version=v1.0 MDRYTRVEKPKPESPINENEIRITSSGPVRNYISYATSLLQDKHAKEIVLKAMGQAISKTVSIAESIKRRNPRLHQDTAISSVSITDVWEPIEEGLVPVE QTRQVSMITITLSFSELDKNSPGYQAPQAGEQSKPQYQQQPQQYRQVRGPYYEDSYGGGRGRGGRGRGRGRGRNWGRGGYGYGNFPENYQGNYQGNYQRG YEENGGYSNWGRGGGRGRNWGYRGAGYEGGGRGGDYEGRGSGYEGGRGGGYEGGRGGYEGGRGGYEGGRGGYGGGRGGGYEGGRGGGYEGGRDGGYEGGR GGYGGRRGGGFEGGRGGYGGGRGGGYEGGNRGDGYEGGRMSGYRGGYEGNRGGGYEGGRGGRGGGRSYGRGRGRGGGRTGGGGDNQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10022807 [exp]	0	1
AT3G07030			Alba DNA/RNA-binding protein (...		Lus10011874 [exp]	1.0	0.9073
AT5G60800			Heavy metal transport/detoxifi...		Lus10016133 [exp]	2.0	0.8469
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	5.5	0.8009
AT4G13270			Late embryogenesis abundant (L...		Lus10024264 [exp]	5.5	0.7964
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10042268 [exp]	5.7	0.8183
AT3G53540			unknown protein		Lus10025295 [exp]	7.9	0.7740
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	8.4	0.7893
AT3G22660			rRNA processing protein-relate...		Lus10031698 [exp]	9.4	0.7675
AT1G16210			unknown protein		Lus10022649 [exp]	12.6	0.8108
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Lus10008862 [exp]	12.7	0.7172

Compare expression of checked genes

Lus10022807 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.