Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60970 440 / 5e-144 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT3G60160 444 / 6e-142 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT1G04120 380 / 2e-118 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13090 369 / 1e-114 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G13080 368 / 6e-114 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13100 360 / 4e-111 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G59140 326 / 4e-99 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G21250 316 / 2e-95 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G62700 293 / 2e-87 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT2G47800 284 / 5e-84 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018027 [exp] 539 / 7e-178 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 536 / 2e-176 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10022858 [exp] 378 / 2e-117 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10024965 [exp] 376 / 4e-117 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10013201 [exp] 373 / 4e-117 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10030716 [exp] 329 / 1e-103 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10039320 [exp] 326 / 7e-99 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10027567 [exp] 324 / 3e-98 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10004896 [exp] 309 / 2e-93 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180100 [exp] 477 / 4e-154 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.010G055200 [exp] 390 / 2e-122 AT3G13080 1227 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362300 [exp] 385 / 2e-120 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.008G179500 [exp] 385 / 2e-120 AT3G13080 1261 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.018G149700 [exp] 367 / 1e-114 AT3G13080 1168 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G198401 [exp] 369 / 3e-114 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 368 / 4e-114 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197200 [exp] 365 / 4e-113 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 365 / 5e-113 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124606 [exp] 365 / 6e-113 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10022808 pacid=23160007 polypeptide=Lus10022808 locus=Lus10022808.g ID=Lus10022808.BGIv1.0 annot-version=v1.0 ATGAAGAAGAAGAAGCAGCAGAAGAAAGAAGAGGAGTTAGTTGGTGGTAGTCATCATGTGGGTAAAAAAGTTCTACCCGTCGTCGGAGACAGTACTCCGA CGATCGGTCGACAGAGAAATGTGAAAGGGGAAGAAAACAAAACGAGAGGCGTTTCCAGGATGAAGGAGCTGGTTAGATGGGCTGCTGGTGCTAAGTCTCA CAAACAGGACAAGTTCCTCAGCCACCACAAGCAATTTCAGTCTCCACTATCCATGGCTGCTTCTTCTTCTTCCTCTTCCTCTTCTTGTTCTGCTGATGCT GGCCGTTGTGACAGGAAAGGCAACTGGATCACAACTGATTCTGAATTAAAATACTTTGACCATTTCTCCGAATCACTAGTTGGTGCAGCCACGATCCGCA CCTTCGATCAAGGGGAAAGGTTCATCGTGTCTAATCTCGGTCTTATAGACAACTACTCGAGGCAGTGGTTCCACAACGTGTCCGCTCTGGAATGGTTGTG TTTCAGGCTGAATCTGCTGTCCAATTCCGTGTTTGCTTTCTTTTTGGTTCTGCTCGTTACGCTCCCTGAAGGGATCATCAGTCCAAGTATTGCAGGACTG GCAGTGACATACGGCATAAATCTGAACGTTCTCCAGACTTGGGTTATACGGCATATATGCAGGACTGAGAACAAGATGATTTCTGTAAAAAGAGTTTTAC AGTACACGAAATTAAAAGGCGAAGAATCACCCGTTGCGATTGAAGAGTGCAGACCACCACCAGCTAACTGGCCCGACATAGGAACTATCTATTCGATTGC GGAACATTTGCCATCGGTGTTGAAGAACGTAAGCTGCACTTTCCCGGGGAGCAAAAAAATCGGGGTGGTTGGGAGGACAGGTAGCGGGAAGTCGACTCTA ACACAGGCGTTGTTTAGAATGGTACAAGTGCGAGAAGGGAGCATAATTGTCGACGCGGTTGACATTTCGAGGATCGGACTCCATGACTTGAGATCCAGGC TGAGCATCATCCCCCAGGACCCAACCATGTTTGAAGGCACAGTTAGAGCGAACTTTGACCCGTTAGGCCACTACTCAGACTCGCAAATTTGGGAGGCTTT TAAATTTTTCACGAGGAATAATTTTGCAGGCATTAGAGAAATGCCTGCACGGAAGCTGGACTGTACTGTGACGGAGAACGGAGAGAACTGGAGTGCGGGG CAAAGACAACTGTTGTGCCTGGGAAGAGCTCTGTTGAAGAAGAGCAGAATTCTTGTGCTGGACGAAGCAACCGCGTCGGTGGATTCAGCAACAGACAGTG CGTTGCAGAAGATCATAAGCGAAGAGTTTCAGGATCGGACGGTGGTGACAATAGCTCACAGAATTCATACGGTTATCGATAGCGATCTCGTGGTTGCTGA GAATGATGGCCCGAAAATGTTGCTGCAAAGAAAGGATTCCTTCTTCTCCAAACTTATGAAAGAGTATTCCGCAAGATCATCAAACCTCAATTCTTCTGCT GCTAAGCATTTGTAG
AA sequence Show only first row Show all	>Lus10022808 pacid=23160007 polypeptide=Lus10022808 locus=Lus10022808.g ID=Lus10022808.BGIv1.0 annot-version=v1.0 MKKKKQQKKEEELVGGSHHVGKKVLPVVGDSTPTIGRQRNVKGEENKTRGVSRMKELVRWAAGAKSHKQDKFLSHHKQFQSPLSMAASSSSSSSSCSADA GRCDRKGNWITTDSELKYFDHFSESLVGAATIRTFDQGERFIVSNLGLIDNYSRQWFHNVSALEWLCFRLNLLSNSVFAFFLVLLVTLPEGIISPSIAGL AVTYGINLNVLQTWVIRHICRTENKMISVKRVLQYTKLKGEESPVAIEECRPPPANWPDIGTIYSIAEHLPSVLKNVSCTFPGSKKIGVVGRTGSGKSTL TQALFRMVQVREGSIIVDAVDISRIGLHDLRSRLSIIPQDPTMFEGTVRANFDPLGHYSDSQIWEAFKFFTRNNFAGIREMPARKLDCTVTENGENWSAG QRQLLCLGRALLKKSRILVLDEATASVDSATDSALQKIISEEFQDRTVVTIAHRIHTVIDSDLVVAENDGPKMLLQRKDSFFSKLMKEYSARSSNLNSSA AKHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10022808 [exp]	0	1
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10023335 [exp]	2.8	0.9229
AT5G51990	AP2_ERF	CBF4, DREB1D	DEHYDRATION-RESPONSIVE ELEMENT...		Lus10027412 [exp]	4.9	0.9150
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	5.8	0.9189
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	6.6	0.9126
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10013550 [exp]	7.4	0.9099
AT5G14610			DEAD box RNA helicase family p...		Lus10010718 [exp]	7.9	0.8600
					Lus10034979 [exp]	11.2	0.9078
AT5G48655			RING/U-box superfamily protein...		Lus10022774 [exp]	11.8	0.9077
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10018050 [exp]	14.4	0.8861
					Lus10026794 [exp]	16.7	0.8154

Compare expression of checked genes

Lus10022808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.