Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24730 261 / 7e-91 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) AT5G08290 99 / 5e-27 YLS8 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011878 [exp] 300 / 2e-106 AT3G24730 258 / 1e-89 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10017390 [exp] 98 / 9e-27 AT5G08290 290 / 1e-102 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010188 [exp] 97 / 2e-26 AT5G08290 293 / 4e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Lus10010189 [exp] 39 / 0.0003 AT5G08290 87 / 4e-23 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G287600 [exp] 258 / 1e-89 AT3G24730 245 / 8e-85 mRNA splicing factor, thioredoxin-like U5 snRNP (.1) Potri.007G072700 [exp] 100 / 2e-27 AT5G08290 293 / 5e-104 YELLOW-LEAF-SPECIFIC GENE 8, mRNA splicing factor, thioredoxin-like U5 snRNP (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02966 [flax] [poplar] DIM1 Mitosis protein DIM1
Representative CDS sequence Show only first row Show all	>Lus10022811 pacid=23159986 polypeptide=Lus10022811 locus=Lus10022811.g ID=Lus10022811.BGIv1.0 annot-version=v1.0 ATGAGCTATCTACTGCCGAATCTAACCAAGAAGAAGGAGATCGACTCAATAATCAGGGACACCATTGACAAGGTCCTCGTCCTCCGGTTCGGCCGCGCTT CCGACGCCACCTGTCTCCAGCTCGACGAGATCCTGTCGAAATCAGCGAGGGAGGTCTTCAAGTTCGCGACAGTGGCAGTCGTGGACATGGATTCCGACGA TGTGCAGGTCTACGTCAAGTACTTCGACATCACTCTGGTTCCTTCCACTGTATTCTTCTTCAACGCTCACCATATGAAGATGGATTCCGGGACTGCTGAT CATACCAAATGGATTGGTGCATTTCACACCAAGCAGGACTTCATTGACGTCGTTGAGGCCATATTCAGAGGAGCCATGAAAGGCAAGCTGATAGTGAGTT GCCCATTGCCCCCTGATCGAATACCCAAGTATCAGCTGTTTTACAAAGAAGTTTAG
AA sequence Show only first row Show all	>Lus10022811 pacid=23159986 polypeptide=Lus10022811 locus=Lus10022811.g ID=Lus10022811.BGIv1.0 annot-version=v1.0 MSYLLPNLTKKKEIDSIIRDTIDKVLVLRFGRASDATCLQLDEILSKSAREVFKFATVAVVDMDSDDVQVYVKYFDITLVPSTVFFFNAHHMKMDSGTAD HTKWIGAFHTKQDFIDVVEAIFRGAMKGKLIVSCPLPPDRIPKYQLFYKEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24730			mRNA splicing factor, thioredo...		Lus10022811 [exp]	0	1
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	12.5	0.7693
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001696 [exp]	13.5	0.7473
AT1G16810			unknown protein		Lus10033383 [exp]	17.4	0.7696
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10003977 [exp]	18.2	0.7749
AT3G23490		CYN	cyanase (.1)		Lus10018091 [exp]	18.5	0.7521
AT3G02120			hydroxyproline-rich glycoprote...		Lus10032981 [exp]	20.2	0.7222
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10005161 [exp]	23.2	0.7362
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10015714 [exp]	23.7	0.7321
AT5G28040	GeBP		DNA-binding storekeeper protei...		Lus10004121 [exp]	30.7	0.7443
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10008652 [exp]	36.7	0.7171

Compare expression of checked genes

Lus10022811 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.