Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33150 667 / 0 PED1, KAT2, PKT3 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) AT1G04710 626 / 0 KAT1, PKT4 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1) AT5G48880 617 / 0 PKT2, PKT1, KAT5 PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, 3-KETO-ACYL-COENZYME A THIOLASE 5, peroxisomal 3-keto-acyl-CoA thiolase 2 (.1.2.3) AT5G47720 181 / 8e-52 Thiolase family protein (.1.2.3.4.5) AT5G48230 178 / 5e-51 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011879 [exp] 800 / 0 AT2G33150 725 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10023672 [exp] 654 / 0 AT2G33150 818 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10011748 [exp] 609 / 0 AT2G33150 767 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Lus10039109 [exp] 184 / 5e-53 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10038749 [exp] 176 / 8e-50 AT5G47720 663 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10006362 [exp] 169 / 2e-47 AT5G47720 652 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10012317 [exp] 170 / 3e-45 AT3G07700 1051 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216400 [exp] 694 / 0 AT2G33150 660 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.001G051900 [exp] 665 / 0 AT2G33150 780 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.001G051800 [exp] 635 / 0 AT2G33150 673 / 0.0 PEROXISOME DEFECTIVE 1, 3-KETOACYL-COA THIOLASE 2, peroxisomal 3-ketoacyl-CoA thiolase 3 (.1) Potri.006G004400 [exp] 172 / 1e-48 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Potri.014G168700 [exp] 164 / 8e-46 AT5G48230 665 / 0.0 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) Potri.013G097500 [exp] 91 / 2e-22 AT1G04710 94 / 2e-24 3-KETO-ACYL-COA THIOLASE 1, peroxisomal 3-ketoacyl-CoA thiolase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02803 [flax] [poplar] Thiolase_C Thiolase, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00108 [flax] [poplar] Thiolase_N Thiolase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10022812 pacid=23159898 polypeptide=Lus10022812 locus=Lus10022812.g ID=Lus10022812.BGIv1.0 annot-version=v1.0 ATGGACAAGGCGATCAATCGGCAGAAAGTTCTGCTAGCTCACCTTCAACCCAGCTCCCGGACTCAATCCCATCATGAATCACCCTTCCTCTCCGTGAGAA ATGAGAATTCTTTCCTCCTAAATCCTTGGATCCCGCTAAATTTTACACTGTCTAATTTATCTTCTGTTTCGCAACTGGGTCGCTTAATTGCTTACCGAAG GCTTCAGCTTGCGCCGGTGGAGCTGCATCATTTGGCGACGACATCTGCGTATCGAACTGCCTTGTGCAAATCCAGGCGCGGTGGGTTCAAGGATACGCTT CCTGATGATTTACTCGCCCCTGTTCTTAAGGCAGTGGTAGAGAAAACGAATGTGAATCCAAGTGAAGTGGGAGATATAGTGGTGGGTACAGTTCTAGCTC CTGGCTCTCAGAGAGCAACTGAGTGCAGAATGGCAGCTTTCTATGCTGGTTTCCCTGAAACTGTGCCTGTTAGAACAGTCAACAGGCAGTGTTCTTCTGG GCTGCAGGCCGTTGCTGATGTTGCTGCTTCAATCAAAGCAGGATTTTATGACATTGGAATTGGAGCTGGTCTAGAGTGCATGACAATTGACAATATCAGA GGAGTTCAGAAAGCTAATCCCAGGGTTGAGAGCTTTGTTCAAGCCCGAGATTGCCTTCTTCCTATGGGCATTACTTCCGAAAACATTGCCCAGCGGTATG GGGTAACAAGACAAGAGCAAGATCAAGCTGCTGTCGACTCTCATAGGAAGGCTGCTGCCGCAACAGCCGCTGGTAAATTTAAAGATGAGATTATCCCAGT TTCTACCAAGGTCATTGACCCAAAAACTGGGAATGAAACTCCCGTGACTATCTCTGTTGATGACGGGATCCGACCAAACACAAACCTTGAAGGCCTTGCC AAGCTGAAACCTGCATTCAAAAAGGATGGCTCTACAACTGCAGGTACTGCTAGCCAAGTGAGTGATGGTGCTGGAGCAGTCCTCCTAATGAAGAGAAGCT TGGCCATCCAGAAGGGCCTTCCCATTCTTGGTGTGCTCAGGAGTTTTGCTGCTGTTGGAGTGGATCCTGCTGTGATGGGGATAGGTCCGGCTGTTGCGAT TCCAGCAGCAGTGAAAGCTGCTGGATTGGAACTTCAAGATATTGACCTCTTCGAAATTAACGAGGCATTTGCATCCCAGTTCGTCTACTGCCGTAAGAAG CTAGAGCTTGACCCAGCCAAGGTCAATGTTAACGGTGGAGCAATGGCTCTCGGCCACCCTTTGGGCGCTACAGGTGCTCGCTGCGTCGCCACTCTTTTGC ACGAGATGAAGCGCCGTGGAAGAGACTCTCGTTTCGGAGTCATCTCAATGTGCATCGGCACAGGAATGGGGGCGGCAGCTGTTTTCGAACGAGGAGACTG TGTCGACGAGCTCTGTAATGCCCGATCTGTCGGAACCAGTGGCACCCTCCTATCAAAGGATGCTCGCTAG
AA sequence Show only first row Show all	>Lus10022812 pacid=23159898 polypeptide=Lus10022812 locus=Lus10022812.g ID=Lus10022812.BGIv1.0 annot-version=v1.0 MDKAINRQKVLLAHLQPSSRTQSHHESPFLSVRNENSFLLNPWIPLNFTLSNLSSVSQLGRLIAYRRLQLAPVELHHLATTSAYRTALCKSRRGGFKDTL PDDLLAPVLKAVVEKTNVNPSEVGDIVVGTVLAPGSQRATECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAASIKAGFYDIGIGAGLECMTIDNIR GVQKANPRVESFVQARDCLLPMGITSENIAQRYGVTRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVSTKVIDPKTGNETPVTISVDDGIRPNTNLEGLA KLKPAFKKDGSTTAGTASQVSDGAGAVLLMKRSLAIQKGLPILGVLRSFAAVGVDPAVMGIGPAVAIPAAVKAAGLELQDIDLFEINEAFASQFVYCRKK LELDPAKVNVNGGAMALGHPLGATGARCVATLLHEMKRRGRDSRFGVISMCIGTGMGAAAVFERGDCVDELCNARSVGTSGTLLSKDAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10022812 [exp]	0	1
					Lus10025204 [exp]	1.0	0.9548
AT2G46080			unknown protein		Lus10005122 [exp]	2.4	0.9180
AT1G69840			SPFH/Band 7/PHB domain-contain...		Lus10036715 [exp]	3.9	0.9120
AT2G17890		CPK16	calcium-dependent protein kina...		Lus10041914 [exp]	4.5	0.9137
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	4.9	0.9146
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10018839 [exp]	6.9	0.8877
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Lus10018810 [exp]	8.4	0.8928
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	9.2	0.9083
AT1G77480			Eukaryotic aspartyl protease f...		Lus10018146 [exp]	9.2	0.8823
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10032556 [exp]	9.3	0.8398

Compare expression of checked genes

Lus10022812 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.