Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54380 276 / 2e-88 spliceosome protein-related (.1) AT2G42510 176 / 1e-49 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011880 [exp] 639 / 0 AT1G54380 281 / 3e-90 spliceosome protein-related (.1) Lus10025495 [exp] 60 / 7e-10 AT1G54380 50 / 1e-06 spliceosome protein-related (.1) Lus10026705 [exp] 59 / 2e-09 ND 45 / 5e-05 Lus10023803 [exp] 50 / 6e-08 ND 34 / 0.003
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G036200 [exp] 264 / 2e-81 AT1G54380 264 / 2e-79 spliceosome protein-related (.1) Potri.007G124150 [exp] 196 / 3e-56 AT1G54380 253 / 2e-75 spliceosome protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04938 [flax] [poplar] SIP1 Survival motor neuron (SMN) interacting protein 1 (SIP1)
Representative CDS sequence Show only first row Show all	>Lus10022813 pacid=23160006 polypeptide=Lus10022813 locus=Lus10022813.g ID=Lus10022813.BGIv1.0 annot-version=v1.0 ATGGATTCAGAAACCTTGTTGGAGGATAAGAAGAAGCAATTGTTGGCCAGCCTCGAAGGTGGAGCCATCTTTAAAGGAAAGAGCTTCTTCGAAGATGTTG ATGATGGCAGTTCCGATGGATTCGCTGAATCTAATGAACCAGCAGAGATAGTCGTCTGTGAGAATCAAAAGAAGATCAGAAGGCGAAGAAGGAAGGGAAA GGATTTGCTCAAGGGTTTGGAGAAAGATCAAACAAGAACGAATCAGGCTATTAACAACAGTTCATGTCCAATCGACGGTTCCCCGAAGTACTCGAGGATA GAGATGGAGGCCATGAGGTTTTCGAACATTGTGGAACAGAGGAACTTCTGGACACGTGTATACAACGGGTTAGAAGCTGCGGTTGTGAAGGAGTATGAGG ATTTGTCATGCTCAAACACCAAGCATAGCAACTCTGATCCCAAATTGGTCGTGGAGGAAGATGATAGTGATGATGATGATGATTATGCTAGCATTCAAAG ACCAGCTTTTTATGTAGAAGGAGAACCGGATTTCGAGTCGGGGCCTCCAGAAGATGGATTAGAGTATCTTAGACGAGTCAGGTGGGAAGCTGCCCAAATC CCGAAAGTGAAGGTGGCAAAAATCGACAAGCATACGATCAGTAAAGAGCAAAGCGTGTATATGCCTCAGATTCCTGATATTCCCAAGTGTCCAGACCATC TACTGCCTTCAAAAGCTTGGGAAGATGCATTTCTCGTAGATTTTTCGCAACTAAGACTGTCGTTGGCAAGAGATGAAGAGTATCCTAATGATCAAACAAC TAAAGCCGAGGTCGATGAGAGTTTGTTGATTCTCCCAACGTCATCGGCTGTGCGAGCGATGGATTCTGTTTCTCGAGTTTCGTCATTGAAGAAACGGATA AGCTTGGCGGAAAAGGCGAGTAAGTTATCGAAGGGTGAGTGCATGTGGCTGTTTGCTCTGTGTGCAGCGGTTGATACTCCATTGCTGGCTGATACGAGTG CTGCGATTCGGAGTCTGCTGAGGAAATGTGCGAGCCTACGAGCAGGGAAGTCGGAGTTGGATGATGAGGTTGTGATGTTGAATGTTTTGGCAACTGTTTG TGGCAGATACTTTGGACAGGCAGAAAACTAA
AA sequence Show only first row Show all	>Lus10022813 pacid=23160006 polypeptide=Lus10022813 locus=Lus10022813.g ID=Lus10022813.BGIv1.0 annot-version=v1.0 MDSETLLEDKKKQLLASLEGGAIFKGKSFFEDVDDGSSDGFAESNEPAEIVVCENQKKIRRRRRKGKDLLKGLEKDQTRTNQAINNSSCPIDGSPKYSRI EMEAMRFSNIVEQRNFWTRVYNGLEAAVVKEYEDLSCSNTKHSNSDPKLVVEEDDSDDDDDYASIQRPAFYVEGEPDFESGPPEDGLEYLRRVRWEAAQI PKVKVAKIDKHTISKEQSVYMPQIPDIPKCPDHLLPSKAWEDAFLVDFSQLRLSLARDEEYPNDQTTKAEVDESLLILPTSSAVRAMDSVSRVSSLKKRI SLAEKASKLSKGECMWLFALCAAVDTPLLADTSAAIRSLLRKCASLRAGKSELDDEVVMLNVLATVCGRYFGQAEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54380			spliceosome protein-related (....		Lus10022813 [exp]	0	1
AT1G54380			spliceosome protein-related (....		Lus10011880 [exp]	1.4	0.8533
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10017293 [exp]	1.7	0.8213
AT4G15770			RNA binding (.1)		Lus10000507 [exp]	3.2	0.8263
AT5G24510			60S acidic ribosomal protein f...		Lus10008944 [exp]	6.6	0.8059
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	10.2	0.7700
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011959 [exp]	12.3	0.7046
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	14.7	0.7474
AT3G63390			unknown protein		Lus10024829 [exp]	15.3	0.7165
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	17.3	0.7560
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10013607 [exp]	19.0	0.7341

Compare expression of checked genes

Lus10022813 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.