Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21350 265 / 2e-89 MED6 RNA polymerase transcriptional regulation mediator-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011881 [exp] 350 / 5e-123 AT3G21350 324 / 7e-113 RNA polymerase transcriptional regulation mediator-related (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04934 [flax] [poplar] Med6 MED6 mediator sub complex component
Representative CDS sequence Show only first row Show all	>Lus10022814 pacid=23159947 polypeptide=Lus10022814 locus=Lus10022814.g ID=Lus10022814.BGIv1.0 annot-version=v1.0 ATGGCGACGCCACCACCCAATTTCGAAGGAAACCCGATGCCGCCGCCGCCTCCACAGCCGCCGGGAACGGACATGACGGGGATGTGTTTCAGAGACCAGC TATGGCTCAACTCTTACCCTCTGGATCGTAACCTAATCTTCGATTACTTCGCCCTGTCGCCATTCTACGACTGGAATTGCAACAACGAGCAGCTCCGGAT GCGCGCAATCCACCCTCTCGATCTCTCCCACCTCTCTAAGATGACGGGATTCGAGTACATGTTGAGCGAAGTGATGGAGCCTCATCTGTTCGTGATGAGG AAGCAGAGGAGGGATAGCCCTGAGAAAGTAATTCCAATGCTGACTTATTACGTCTTGGATGGCTCCATTTACCAGGCGCCTCAGCTCTGCAATGTCTTCG CTTCTCGAGTTGGGCGAGCATTGTATTATATATCGAAAGCTTTTACTACGGCTGCTTCAAAGTTGGAGAAGATCGGATATGTTGAAGCTGAAGGCGAGGG TGCAGCACCTTCGGAGCCAAAGGCTACTAAAGATGTAATCAACTTCAAGGAAGTTAAGAGAATCGATCATATCCTCGCCTCCTTACAACGCAAGTTACCT CCTGCTCCACCGCCGCCACCATTCCCTGAAGGGTACGTACCCCCTGCAACGAGCGAAACAGAGAAAGCAGGCGAGGGTCAACAACAAGGAGGAGAGACAC AACAGCCCCCTCCAGTAGATCCAATTATTGATCAAGGTCCAGCTAAGAGAATGAAATTCTGA
AA sequence Show only first row Show all	>Lus10022814 pacid=23159947 polypeptide=Lus10022814 locus=Lus10022814.g ID=Lus10022814.BGIv1.0 annot-version=v1.0 MATPPPNFEGNPMPPPPPQPPGTDMTGMCFRDQLWLNSYPLDRNLIFDYFALSPFYDWNCNNEQLRMRAIHPLDLSHLSKMTGFEYMLSEVMEPHLFVMR KQRRDSPEKVIPMLTYYVLDGSIYQAPQLCNVFASRVGRALYYISKAFTTAASKLEKIGYVEAEGEGAAPSEPKATKDVINFKEVKRIDHILASLQRKLP PAPPPPPFPEGYVPPATSETEKAGEGQQQGGETQQPPPVDPIIDQGPAKRMKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016539 [exp]	3.0	0.9307
AT4G29830		VIP3	vernalization independence 3, ...		Lus10017159 [exp]	3.7	0.9507
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	3.7	0.9482
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	4.6	0.9384
AT5G52370			unknown protein		Lus10040713 [exp]	4.6	0.9439
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10025705 [exp]	7.5	0.9165
AT2G38730			Cyclophilin-like peptidyl-prol...		Lus10026161 [exp]	7.7	0.9266
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10031277 [exp]	10.8	0.9168
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10035211 [exp]	11.4	0.9416
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	12.2	0.9046

Compare expression of checked genes

Lus10022814 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.