Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48890 58 / 1e-10 C2H2ZnF LATE LATE FLOWERING, C2H2-like zinc finger protein (.1) AT5G14010 52 / 2e-08 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 51 / 4e-08 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G80730 51 / 5e-08 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G57520 49 / 2e-07 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT1G66140 49 / 3e-07 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT5G01860 47 / 2e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G25160 46 / 4e-06 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 45 / 7e-06 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 42 / 6e-05 C2H2ZnF ZFP6 zinc finger protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011884 [exp] 186 / 2e-60 AT5G14010 67 / 5e-14 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10013243 [exp] 54 / 6e-09 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10030764 [exp] 54 / 6e-09 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10026597 [exp] 52 / 1e-08 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10028997 [exp] 50 / 1e-07 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10010388 [exp] 50 / 2e-07 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10014350 [exp] 49 / 2e-07 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10025471 [exp] 49 / 2e-07 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10006960 [exp] 49 / 2e-07 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178200 [exp] 101 / 4e-27 AT5G48890 61 / 1e-11 LATE FLOWERING, C2H2-like zinc finger protein (.1) Potri.002G238700 [exp] 100 / 6e-27 AT5G48890 71 / 1e-15 LATE FLOWERING, C2H2-like zinc finger protein (.1) Potri.001G324600 [exp] 55 / 2e-09 AT5G14010 75 / 5e-17 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G021400 [exp] 54 / 1e-08 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G298700 [exp] 51 / 4e-08 AT1G24625 86 / 1e-20 zinc finger protein 7 (.1) Potri.009G093300 [exp] 51 / 5e-08 AT1G24625 89 / 6e-22 zinc finger protein 7 (.1) Potri.006G261700 [exp] 51 / 7e-08 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G063800 [exp] 50 / 1e-07 AT5G01860 92 / 6e-22 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.018G123900 [exp] 50 / 1e-07 AT5G25160 88 / 2e-20 zinc finger protein 3 (.1) Potri.001G047500 [exp] 50 / 2e-07 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022816 pacid=23159968 polypeptide=Lus10022816 locus=Lus10022816.g ID=Lus10022816.BGIv1.0 annot-version=v1.0 ATGGCCATCGAGCAAGAGATCAACAGAAACCATGAAGAAGAACAGCAACAGGGCAGCAATGGCAGAGTGTTCCCCTGCCTTTTCTGTGCGAGGAAATTCT ACAGCTCCCAAGCATTAGGGGGCCACCAGAACGCTCACAAGAAGGAGAGGAACGCCGCCAGAAGGGCGAAAAGAGCGTCGGAATACGCCGGAGTTTCTTC GCCGTCGCTTTCGCCGGCGTCGGCGTTGATGCATTACCATCAATACGGCCAGCAGAGCGTCCCGTCTCTTTACATCGCTGCGCATGCGGCCAGGCTGCAG TGCTTCCCTGGACAGTTTCCCGGCCGGAAGGGAACGAGCGGCGGTGGAAGGTTCGACGGCGTGGTGGTTTATGGTGGCGGGCAGGTGGAGCAAGATGATG ATAATGATGAGGAGGAGGAAGAGAGCTTGGTGAATTGGCAGAGGAGTGTAAGGTACAGAGGTGAAAGTGAGGAGGAGAGGATCAATGGCGGCGGTGATTC CGACATTGATAATAAGGATCAGAAGCTTGATTTGTCCCTCCATTTATGA
AA sequence Show only first row Show all	>Lus10022816 pacid=23159968 polypeptide=Lus10022816 locus=Lus10022816.g ID=Lus10022816.BGIv1.0 annot-version=v1.0 MAIEQEINRNHEEEQQQGSNGRVFPCLFCARKFYSSQALGGHQNAHKKERNAARRAKRASEYAGVSSPSLSPASALMHYHQYGQQSVPSLYIAAHAARLQ CFPGQFPGRKGTSGGGRFDGVVVYGGGQVEQDDDNDEEEEESLVNWQRSVRYRGESEEERINGGGDSDIDNKDQKLDLSLHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Lus10022816 [exp]	0	1
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10038075 [exp]	1.7	0.9872
AT3G21720		ICL	isocitrate lyase (.1)		Lus10015122 [exp]	17.1	0.9817
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	21.6	0.9783
AT3G21720		ICL	isocitrate lyase (.1)		Lus10031552 [exp]	25.0	0.9782
					Lus10033373 [exp]	28.0	0.9780
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	30.7	0.9780
					Lus10001326 [exp]	33.2	0.9780
					Lus10026755 [exp]	35.4	0.9780
					Lus10014857 [exp]	37.6	0.9780
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10015566 [exp]	39.6	0.9780

Compare expression of checked genes

Lus10022816 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.