Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24660 816 / 0 TMKL1 transmembrane kinase-like 1 (.1) AT3G51740 259 / 1e-75 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT3G56100 239 / 7e-69 IMK3, MRLK meristematic receptor-like kinase (.1) AT3G08680 230 / 2e-66 Leucine-rich repeat protein kinase family protein (.1.2) AT1G68400 217 / 3e-61 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G48480 216 / 6e-61 RKL1 receptor-like kinase 1 (.1) AT5G07620 202 / 1e-58 Protein kinase superfamily protein (.1) AT5G62710 208 / 2e-58 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 202 / 4e-56 RLK902 receptor-like kinase 902 (.1) AT2G36570 201 / 1e-55 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011886 [exp] 827 / 0 AT3G24660 649 / 0.0 transmembrane kinase-like 1 (.1) Lus10022679 [exp] 270 / 9e-80 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 263 / 2e-77 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 256 / 7e-75 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10034446 [exp] 247 / 2e-72 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 245 / 8e-72 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 239 / 2e-69 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 238 / 4e-69 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 225 / 9e-65 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G251700 [exp] 898 / 0 AT3G24660 917 / 0.0 transmembrane kinase-like 1 (.1) Potri.019G131500 [exp] 237 / 8e-69 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 235 / 3e-68 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 228 / 1e-65 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G130600 [exp] 228 / 1e-65 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 226 / 3e-64 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.004G086100 [exp] 224 / 4e-64 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.010G183400 [exp] 227 / 1e-63 AT3G51740 903 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 225 / 2e-63 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.016G126300 [exp] 224 / 4e-63 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10022818 pacid=23159935 polypeptide=Lus10022818 locus=Lus10022818.g ID=Lus10022818.BGIv1.0 annot-version=v1.0 ATGGCGGATTTGAAACTTTACCCTCTCCTGCTTTTCTACATCTCCATCACGGCCGCCATTGCTTCAACAACGACGGATGTCGAGCTTCTCCTCGCAAAAA TCAAACCTTTACTCCAAGGTAACAACGAAAACCTCTTGCTTACCTCATGGAACTCCTCTGTCCCCCTTTGTCAATGGAGAGGCCTCCAATGGGTTTACTC GAACGGGTCAAAGCTCACTTCTTGCTCAAACAACTTAGCTCCGGAATGGTCAAGTCTCACCCTTTACAAAGACCCTTCCCTTCACATTTCATCCCTCCAG CTGCCGTCTGCTAACCTCACTGGCTCCTTACCCAGAGAGCTTGGTGAGTTCTCCATGCTGAAATCCTTGTTCTTGAACTTCAACTCACTAAGTGGAACAA TCCCACTTGAACTAGGGTACAGCTCTTCCTTGTCAGACATTGATTTGAGTGGCAATCTGCTTAGTGGGTCTTTAGCTCCTTCAATTTGGAACTTGTGTGA CAAATTGAGTACAATCAGGGTTCATGGTAATTCATTGTTTGGTGCACTCCCTGACCCTGCATTGCCCAATTCCACTTGTGTGAATTTGAAAGTTGTTGAC TTGGGCGGGAATAAGCTTTCGGGGAAGTTCCCTGAATTTGTTGTGACTAGCTTTCTAGGGTTGAAGGAGCTTGATCTTTCGAGTAATTCGTTTGAAGGTT CGATTCCTCCCGGTTTGAGTAAGATGTCGAGTCTCGAGAAGTTGAACCTTTCCCACAACAATTTCAGTGGGGTGTTGCCTGTCTTTGAAGGCTCCTCCTC CAAGTTTGGTGTGGAGGCTTTTGAAGGGAACAGTCCTGATCTATGTGGTTCTCCCTTGAGAAGCTGCACAGCAAGAACTTCCGGATTGAGCTCGGGGACG ATAGCAGGGATAGTTATTGGATTGATGACTGGAACGGTGGTGTTTGCTTCGTTGTTGATTGGTTATGTACAGAACAAGAAGAAGAAAGGAAGAGGGGAGA GTGAGGATGAAGTGGAAGAATGGGAAGATGAGGAAAGTGGTGGCAATGGTGGAAATGTTGGTGGTGCTGGAGGAGGAGAAGGGAAGCTTGTGTTGTTCCA AGGTGGCGAGCATTTGGTGCTCGACGATGTGTTGAATGCGACAGGGCAAGTTATGGAGAAGACTAACTATGGAACTATTTACAAGGCTAAGCTTGCTGAT GGGAGCACTATTGCTTTGAGGCTGTTGAGAGAAGGAAGTTGTAAAGATGGAGGCTCATGTTCTGCTGCGGTCAAACAGCTTGGGAGGATTAGGCATGAGA ACTTGATTCCCTTGAGAGCTTTCTACCAAGGGAAGAGAGGTGAAAAGCTTCTCATCTTTGACTACCTTCCACAACGTAACCTCCACGATTTATTGCACGA AACCAAAGTAGGGAAACCAGTGCTCAACTGGGCCAAGAGACACAAGATTGCACTAGGAATCGCCAGAGGCCTTGCATACTTACACACGGGGCTCGAACCA CCAATCACCCACGGCAACATTAGATCGAAAAACGTACTAGTAGATGACTTCTCCGTGCCTAGGTTGACCGAGTTTGGGCTAGACAAGCTGATGGTCCCGA ATGTAGCTGACGAGATCGTGGCACAGGCAAAAACCGATGGTTATAAGGCACCGGAGCTTCAGAGGATGAAGAAGTGCAATTCGAGGACTGATGTCTATGC ATTCGGGATACTACTTCTGGAGATCTTGATAGGAAAGAAGCCAGGGAAGAGTGGTAATAAAGACAGTGACTTTGTGGACTTGCCTTCCACTGTTAAGGTG GCAGTGTTGGAGGAAACTACAATGGAGGTGTTTGATATTGATGTTGTGAAAGGGCTTAGGAACCCTTTGGAGGAAGGTTTGCTTCAGGCATTGAAGCTTG CGATGGGGTGCTGTGCTCCGGTTCCTTCGGTTAGGCCGACTATGGATGAAGTTGTGAAGCAGTTGGAAGAGAACCGGCCTAGGAACCGGTCTGCGTTGTA CAGCCCGGCTGAGAGTAGAAGTGGACTCGCTACACCCTTTTGA
AA sequence Show only first row Show all	>Lus10022818 pacid=23159935 polypeptide=Lus10022818 locus=Lus10022818.g ID=Lus10022818.BGIv1.0 annot-version=v1.0 MADLKLYPLLLFYISITAAIASTTTDVELLLAKIKPLLQGNNENLLLTSWNSSVPLCQWRGLQWVYSNGSKLTSCSNNLAPEWSSLTLYKDPSLHISSLQ LPSANLTGSLPRELGEFSMLKSLFLNFNSLSGTIPLELGYSSSLSDIDLSGNLLSGSLAPSIWNLCDKLSTIRVHGNSLFGALPDPALPNSTCVNLKVVD LGGNKLSGKFPEFVVTSFLGLKELDLSSNSFEGSIPPGLSKMSSLEKLNLSHNNFSGVLPVFEGSSSKFGVEAFEGNSPDLCGSPLRSCTARTSGLSSGT IAGIVIGLMTGTVVFASLLIGYVQNKKKKGRGESEDEVEEWEDEESGGNGGNVGGAGGGEGKLVLFQGGEHLVLDDVLNATGQVMEKTNYGTIYKAKLAD GSTIALRLLREGSCKDGGSCSAAVKQLGRIRHENLIPLRAFYQGKRGEKLLIFDYLPQRNLHDLLHETKVGKPVLNWAKRHKIALGIARGLAYLHTGLEP PITHGNIRSKNVLVDDFSVPRLTEFGLDKLMVPNVADEIVAQAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGNKDSDFVDLPSTVKV AVLEETTMEVFDIDVVKGLRNPLEEGLLQALKLAMGCCAPVPSVRPTMDEVVKQLEENRPRNRSALYSPAESRSGLATPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10022818 [exp]	0	1
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	1.0	0.9332
AT1G47670			Transmembrane amino acid trans...		Lus10011668 [exp]	2.0	0.8850
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	2.8	0.8447
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	3.5	0.8788
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	8.0	0.8564
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	9.5	0.8463
AT3G50660		PSC1, CYP90B1, ...	SUPPRESSOR OF NPH4 2, SHADE AV...		Lus10024016 [exp]	10.0	0.8381
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	10.2	0.8492
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	10.4	0.8416
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	12.8	0.8357

Compare expression of checked genes

Lus10022818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.