Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24650 305 / 2e-97 B3 SIS10, ABI3 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) AT3G26790 141 / 5e-39 B3 FUS3 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) AT1G28300 128 / 1e-33 B3 LEC2 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) AT2G30470 87 / 2e-18 B3 HSI2, VAL1 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) AT4G32010 82 / 1e-16 B3 HSL1, HSI2-L1, VAL2 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) AT4G21550 76 / 7e-15 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT4G01500 59 / 1e-09 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT1G68840 59 / 2e-09 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G25560 56 / 1e-08 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G13260 56 / 2e-08 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011888 [exp] 620 / 0 AT3G24650 312 / 6e-96 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Lus10012572 [exp] 140 / 1e-38 AT3G26790 259 / 4e-85 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10041521 [exp] 140 / 2e-38 AT3G26790 255 / 1e-83 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Lus10015428 [exp] 113 / 1e-28 AT1G28300 163 / 1e-47 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Lus10018440 [exp] 94 / 2e-20 AT4G32010 487 / 1e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10011245 [exp] 94 / 3e-20 AT2G30470 399 / 1e-122 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Lus10022741 [exp] 86 / 8e-18 AT4G32010 748 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025226 [exp] 82 / 2e-16 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10025142 [exp] 79 / 1e-15 AT4G32010 794 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252000 [exp] 326 / 2e-105 AT3G24650 499 / 2e-167 SUGAR INSENSITIVE 10, ABSCISIC ACID INSENSITIVE 3, ABA INSENSITIVE 3, AP2/B3-like transcriptional factor family protein (.1) Potri.001G322700 [exp] 139 / 3e-38 AT3G26790 279 / 3e-93 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.017G061200 [exp] 137 / 2e-37 AT3G26790 288 / 8e-97 FUSCA 3, AP2/B3-like transcriptional factor family protein (.1) Potri.004G045800 [exp] 128 / 3e-33 AT1G28300 201 / 2e-60 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.011G054000 [exp] 121 / 1e-30 AT1G28300 154 / 5e-43 LEAFY COTYLEDON 2, AP2/B3-like transcriptional factor family protein (.1) Potri.019G130300 [exp] 88 / 1e-18 AT2G30470 757 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.013G157500 [exp] 87 / 2e-18 AT2G30470 767 / 0.0 VP1/ABI3-LIKE 1, high-level expression of sugar-inducible gene 2 (.1) Potri.011G043600 [exp] 84 / 3e-17 AT4G32010 479 / 5e-157 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.004G035300 [exp] 82 / 2e-16 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Potri.016G136500 [exp] 81 / 3e-16 AT4G32010 789 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10022820 pacid=23160041 polypeptide=Lus10022820 locus=Lus10022820.g ID=Lus10022820.BGIv1.0 annot-version=v1.0 ATGGGAATCGACCCGTTTGGGAATAACGGTGGTGGGGTTGTGGGTCCCAATTTCAACGCGAATTACGGAGTCCACCAGCACCAGTCAACAGATTACAATT TTACCAGTCAGGTGATCGAGTCGGCTCAGTCATGGCCGAGTTCGCGATTTCCGACGCCGGCTCCTTCTCCTCCTGTTCACTACGGTGGCGGCGGATTCGA TAGTTATACCCAACCGGGTGGGTTTTCGGGTTATCTTAACCAGAACCAGTACCCGTACCCGTATCTCTCTGCTGCAACTGCAGGACAGAGCGTCGGCGGG GGACAGTGCGGAGGAGGGGATACGAATGGGCTGGTGAGAATGGGTTCTTCGGCGACGAAGGAGGCGAGGAAGAAGAGAATGGCGAGGCAGAGACGGTTTA TTCCTCATCACCACCGTAATCATCACAACACCGGCGTCAGCCTAGCTGAAAGCCAGGTGGGTCCGGGATTAGTACAGCAGCAGCAGGGGAACTTGGTTTA CTGGCCGATGCGTCCACAAACAGGCATTAGTGGCCCTGGATCGGTTCCAATGGATGGATCGGCGGTGGCGGTGGATCGGCCGGCAGTGCAGAATCAGAAC CATCAGAAGCAGGGAGGGGCGTCGGATAAGCGAAAGGGTTGGAAAGCAGAGAAGAACTTGAGGTTTCTGCTGCAGAAAGTGTTGAAGCAAAGCGATGTTG GCAGCCTTGGCAGAATAGTCCTCCCCAAGAAGGAAGCTGAGACGCATCTGCCAGAACTCGATGCAAGGGACGGAATATCCATTGCCATGGAAGACATCGG GACTTCTCGCGTTTGGAACATGCGCTACAGATTCTGGCCCAACAACAAGAGCAGGATGTATCTCCTCGAAAACACAGGAGATTTCGTGAGGGCAAATGGA CTCCAGGAAGGAGACTTCATAGTCATCTACTCCGATGTCAAATGTGGCAAATACTTGATACGAGGAGTTAAAGTAAGGCAACCAGCAGGGCTTACTAAGC CTGAGAACAAGAAGGCAGCTACAGCAGCTAATGGAAGCAAATCTCAGAGAAAGCCACCTGCAAATTCATCATCCGCCGCTAATAACAAAACAACGCCAGT CCAACAACTCGATACATACAGATAA
AA sequence Show only first row Show all	>Lus10022820 pacid=23160041 polypeptide=Lus10022820 locus=Lus10022820.g ID=Lus10022820.BGIv1.0 annot-version=v1.0 MGIDPFGNNGGGVVGPNFNANYGVHQHQSTDYNFTSQVIESAQSWPSSRFPTPAPSPPVHYGGGGFDSYTQPGGFSGYLNQNQYPYPYLSAATAGQSVGG GQCGGGDTNGLVRMGSSATKEARKKRMARQRRFIPHHHRNHHNTGVSLAESQVGPGLVQQQQGNLVYWPMRPQTGISGPGSVPMDGSAVAVDRPAVQNQN HQKQGGASDKRKGWKAEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELDARDGISIAMEDIGTSRVWNMRYRFWPNNKSRMYLLENTGDFVRANG LQEGDFIVIYSDVKCGKYLIRGVKVRQPAGLTKPENKKAATAANGSKSQRKPPANSSSAANNKTTPVQQLDTYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24650	B3	SIS10, ABI3	SUGAR INSENSITIVE 10, ABSCISIC...		Lus10022820 [exp]	0	1
AT2G28105			unknown protein		Lus10021424 [exp]	9.3	0.7368
AT3G02120			hydroxyproline-rich glycoprote...		Lus10015381 [exp]	30.5	0.7260
					Lus10022950 [exp]	37.9	0.6663
					Lus10014474 [exp]	43.6	0.7047
					Lus10016269 [exp]	52.6	0.7009
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10041877 [exp]	57.3	0.6752
					Lus10017831 [exp]	64.9	0.6410
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011577 [exp]	74.8	0.6097
AT3G05550			Hypoxia-responsive family prot...		Lus10015191 [exp]	75.7	0.5856
AT1G71820		SEC6	SEC6 (.1.2)		Lus10036425 [exp]	85.2	0.5762

Compare expression of checked genes

Lus10022820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.