Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13230 53 / 9e-10 Late embryogenesis abundant protein (LEA) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011889 [exp] 169 / 6e-55 AT4G13230 65 / 2e-14 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10038156 [exp] 125 / 1e-37 AT4G13230 54 / 5e-10 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10042508 [exp] 123 / 7e-37 AT4G13230 52 / 2e-09 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10014004 [exp] 40 / 0.0002 AT4G21020 99 / 2e-24 Late embryogenesis abundant protein (LEA) family protein (.1) Lus10015427 [exp] 40 / 0.0002 AT4G21020 99 / 1e-24 Late embryogenesis abundant protein (LEA) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252100 [exp] 69 / 1e-15 AT4G13230 76 / 1e-18 Late embryogenesis abundant protein (LEA) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022822 pacid=23160063 polypeptide=Lus10022822 locus=Lus10022822.g ID=Lus10022822.BGIv1.0 annot-version=v1.0 ATGGCAACCCAGCTTTTGATGATCATGAGGAGATGTTCTTCTGCTTCGAGGGCTTCTGCTCTCATCTCCAGGCAGATTCAGACGAGTGCAAGGCGAGATT CGGCATTCGATTCGGAAGCTCAGACGACGAAGAAGGGAGCTGAAGAGGCCAAGAAGATGGGCGAGGATCTCAAGGGAAAGGCCGGACATATGTCTGAGAA AGGGAAGGAAATGGCGGGAGAGGCGGCGAACATGGCACAAAACGCGACGGAGAAGGCGAAGCAGAAGGTGGAAGGAGCATGGGGAACGGTGAAGGACACG ACGGAGAAGATGACAGAAAACGTTATGAGCAAAGCCGAGGAGTCTAAGCAAACCGTCAAAGATAACGCCGAAGCCGTCAAGCGTAACATGAACTCCAAGA AATCTGATCTCTCATAA
AA sequence Show only first row Show all	>Lus10022822 pacid=23160063 polypeptide=Lus10022822 locus=Lus10022822.g ID=Lus10022822.BGIv1.0 annot-version=v1.0 MATQLLMIMRRCSSASRASALISRQIQTSARRDSAFDSEAQTTKKGAEEAKKMGEDLKGKAGHMSEKGKEMAGEAANMAQNATEKAKQKVEGAWGTVKDT TEKMTENVMSKAEESKQTVKDNAEAVKRNMNSKKSDLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	0	1
					Lus10008327 [exp]	1.7	1.0000
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	2.4	1.0000
					Lus10010697 [exp]	3.0	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	3.0	0.9447
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	3.2	0.9791
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10010341 [exp]	3.5	0.9577
AT5G20610			unknown protein		Lus10025003 [exp]	4.0	1.0000
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	4.0	0.9502
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	5.3	0.8692
					Lus10024618 [exp]	5.3	0.9546

Compare expression of checked genes

Lus10022822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.