Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022823 pacid=23159903 polypeptide=Lus10022823 locus=Lus10022823.g ID=Lus10022823.BGIv1.0 annot-version=v1.0 ATGTACATATCTCGAAACCATCCTAATTCTCTCATTGCCTATAAACCTCAAATAGCTAAACCGATTTCATCGTCACTCCCATGCAGCTCGGGACGTACCC ACCACCACCAAGGCGGCAACCCCGACCGCCGCCGGCCTCACCGACCACAAGAACTTCGTCTCTTTCGGCGGCGTAGGTGGATTCGCCGTGGATCCGCCGG AGTCGGAGGCGCTGGTGCTGCCGGTGGAGTAGGCGGGATCGGAGGGATCGGAGGAGGTGGCCTCGGCGGGCTTGGAGGTGGTGGACTTGGAGGACTTGGT GGTGCTGGCCTCGGAGGAGGCATCGGTGGAGGTGATGGTGGTTTGGGTGGTCTTGGCGGCGGAATCGGCGGAGGTGACGGCGGTGTGGGGGGTCTTGGGG TGGAGGTCGGGGGCGGAGGGATTGGCGGTGGAAGTGGCGGCGGGTGCGTTGGTGGGGCCGACACTACTGCTGTTAAGCCTTGA
AA sequence Show only first row Show all	>Lus10022823 pacid=23159903 polypeptide=Lus10022823 locus=Lus10022823.g ID=Lus10022823.BGIv1.0 annot-version=v1.0 MYISRNHPNSLIAYKPQIAKPISSSLPCSSGRTHHHQGGNPDRRRPHRPQELRLFRRRRWIRRGSAGVGGAGAAGGVGGIGGIGGGGLGGLGGGGLGGLG GAGLGGGIGGGDGGLGGLGGGIGGGDGGVGGLGVEVGGGGIGGGSGGGCVGGADTTAVKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022823 [exp]	0	1
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10015712 [exp]	1.0	0.9472
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	2.4	0.9230
					Lus10011890 [exp]	3.9	0.9093
AT1G27940		ABCB13, PGP13	ATP-binding cassette B13, P-gl...		Lus10017271 [exp]	4.6	0.8141
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10017827 [exp]	4.9	0.8696
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10013956 [exp]	6.0	0.8870
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	6.3	0.8782
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10033043 [exp]	6.3	0.8648
AT2G40475		ASG8	ALTERED SEED GERMINATION 8, un...		Lus10012896 [exp]	6.6	0.8529
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10032146 [exp]	7.7	0.8518

Compare expression of checked genes

Lus10022823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.