Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04347 67 / 8e-15 Plant self-incompatibility protein S1 family (.1) AT4G16295 64 / 2e-13 SPH1 S-protein homologue 1 (.1) AT2G06090 63 / 3e-13 Plant self-incompatibility protein S1 family (.1) AT4G29035 62 / 1e-12 Plant self-incompatibility protein S1 family (.1) AT3G26880 56 / 9e-11 Plant self-incompatibility protein S1 family (.1) AT5G04350 56 / 1e-10 Plant self-incompatibility protein S1 family (.1) AT1G26797 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT3G26870 52 / 3e-09 Plant self-incompatibility protein S1 family (.1) AT5G06020 52 / 4e-09 Plant self-incompatibility protein S1 family (.1) AT5G12060 51 / 1e-08 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011892 [exp] 252 / 2e-87 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10022826 [exp] 218 / 5e-74 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1) Lus10022825 [exp] 132 / 3e-40 AT4G29035 43 / 7e-06 Plant self-incompatibility protein S1 family (.1) Lus10011895 [exp] 105 / 1e-29 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1) Lus10011897 [exp] 98 / 7e-27 AT2G06090 73 / 2e-17 Plant self-incompatibility protein S1 family (.1) Lus10029375 [exp] 91 / 8e-24 AT5G04347 62 / 4e-13 Plant self-incompatibility protein S1 family (.1) Lus10022830 [exp] 87 / 2e-22 AT2G06090 67 / 6e-15 Plant self-incompatibility protein S1 family (.1) Lus10029390 [exp] 86 / 6e-22 AT4G16295 71 / 5e-16 S-protein homologue 1 (.1) Lus10042506 [exp] 85 / 2e-21 AT4G16295 112 / 5e-32 S-protein homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 109 / 5e-31 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 72 / 2e-16 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.004G199700 [exp] 69 / 1e-15 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.004G199801 [exp] 69 / 2e-15 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.010G008300 [exp] 64 / 2e-13 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 51 / 2e-08 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1) Potri.018G148366 [exp] 48 / 9e-08 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.018G148630 [exp] 49 / 1e-07 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 48 / 2e-07 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.003G175200 [exp] 42 / 2e-05 AT3G24060 177 / 2e-58 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10022824 pacid=23159964 polypeptide=Lus10022824 locus=Lus10022824.g ID=Lus10022824.BGIv1.0 annot-version=v1.0 ATGTCAACAACCTCCGTTGTCGTCCTTGCAATATTCGCACTTTCAGCCGCCGTCGCTGTAACTCCCTCCGCAGCCGGTTACACCCCGTTTCCCGTGCACC ACGTCCACGTCACCAGCCAACTGACCCGCGGGAAGGTGCTGCTGGTACATTGTCAGTCTAAGGACGACGACCTCGGGGTCCACAACCTGACCACCGGTGG CGAATTAAAGTGGCAGTTCAGGCTGAATGTCCTCGGCCACACGCTGTTCTGGTGCTACCTGGCCCCCGACCATTCGCATCACATCGCGTACGACGCGTTC AAGGAAGAGGACGCCGACTACCAGGAGTACTATTTTCATACGTATTGGTTTGCGAAAGACGACGAGGTTTATTTGAGACGGGTGCGGGAGAAGGTCGATC ATGTTACTTCGGGTGGGAAAATGGGAGGGGTTTGTTGA
AA sequence Show only first row Show all	>Lus10022824 pacid=23159964 polypeptide=Lus10022824 locus=Lus10022824.g ID=Lus10022824.BGIv1.0 annot-version=v1.0 MSTTSVVVLAIFALSAAVAVTPSAAGYTPFPVHHVHVTSQLTRGKVLLVHCQSKDDDLGVHNLTTGGELKWQFRLNVLGHTLFWCYLAPDHSHHIAYDAF KEEDADYQEYYFHTYWFAKDDEVYLRRVREKVDHVTSGGKMGGVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04347			Plant self-incompatibility pro...		Lus10022824 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10024389 [exp]	4.2	0.7542
					Lus10007416 [exp]	14.6	0.8537
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Lus10028419 [exp]	35.8	0.7547
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10019331 [exp]	57.6	0.6499
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	121.8	0.6706
AT3G27080		TOM20-3	translocase of outer membrane ...		Lus10041558 [exp]	122.2	0.6706
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10034456 [exp]	122.6	0.6706
AT1G20480			AMP-dependent synthetase and l...		Lus10011621 [exp]	123.0	0.6706
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	123.5	0.6706
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	123.9	0.6706

Compare expression of checked genes

Lus10022824 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.