Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29035 40 / 0.0001 Plant self-incompatibility protein S1 family (.1) AT4G10895 39 / 0.0002 Plant self-incompatibility protein S1 family (.1) AT4G16295 38 / 0.0006 SPH1 S-protein homologue 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022826 [exp] 155 / 1e-49 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1) Lus10011892 [exp] 128 / 7e-39 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10022824 [exp] 106 / 2e-30 AT5G04347 67 / 9e-15 Plant self-incompatibility protein S1 family (.1) Lus10029383 [exp] 59 / 9e-12 AT5G04350 63 / 6e-13 Plant self-incompatibility protein S1 family (.1) Lus10029375 [exp] 58 / 2e-11 AT5G04347 62 / 4e-13 Plant self-incompatibility protein S1 family (.1) Lus10016171 [exp] 57 / 5e-11 AT5G04347 54 / 7e-10 Plant self-incompatibility protein S1 family (.1) Lus10011895 [exp] 55 / 4e-10 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1) Lus10014630 [exp] 53 / 7e-10 AT5G38435 57 / 1e-11 S-protein homologue 8 (.1) Lus10022631 [exp] 51 / 7e-09 AT3G26880 65 / 2e-14 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 59 / 1e-11 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 40 / 9e-05 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10022825 pacid=23159939 polypeptide=Lus10022825 locus=Lus10022825.g ID=Lus10022825.BGIv1.0 annot-version=v1.0 ATGACAACGCCAACCTCCGTCGTCGTCCTTGCGATACTGGCGCTTTCAGCCGCTGTCGCTATAACTCCCTCCACCGCCGGTCTCACCCCGGTCCACCACG TCCACATCACCAGCGACCTTACCGGCGGGAAGGCGCTGGCTGTGCGGCGGGAAGGTGCTGCTGGTACATTCATCATAGCGGACACGCTGTTCTGGTGCTA CCTGGCTCCCGATGATTCGCACCACATCTCGTTCGAGGCGTGGAACAAAAAGGAGGCCAATTATAGGGAGAACCATCTTCATACGTATTGGCGTGCGAAA GACGACGGGGTTTATTTGCGACGGGTGAAGCAGAACGTCGATGAGCATTTGGCCGGGTGGGAAGATGGCAGGGGCATGATGAACCGGACTCGGGTTATCT GA
AA sequence Show only first row Show all	>Lus10022825 pacid=23159939 polypeptide=Lus10022825 locus=Lus10022825.g ID=Lus10022825.BGIv1.0 annot-version=v1.0 MTTPTSVVVLAILALSAAVAITPSTAGLTPVHHVHITSDLTGGKALAVRREGAAGTFIIADTLFWCYLAPDDSHHISFEAWNKKEANYRENHLHTYWRAK DDGVYLRRVKQNVDEHLAGWEDGRGMMNRTRVI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29035			Plant self-incompatibility pro...		Lus10022825 [exp]	0	1
					Lus10038154 [exp]	1.0	0.9806
AT4G18770	MYB	ATMYB98	myb domain protein 98 (.1)		Lus10042111 [exp]	2.4	0.9509
AT1G73110			P-loop containing nucleoside t...		Lus10024092 [exp]	3.0	0.9679
AT2G45650	MADS	AGL6	AGAMOUS-like 6 (.1)		Lus10015017 [exp]	3.2	0.9695
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	4.9	0.9421
AT5G10520		RBK1	ROP binding protein kinases 1 ...		Lus10002659 [exp]	5.7	0.9552
					Lus10033284 [exp]	5.9	0.9485
AT5G41020	MYB		myb family transcription facto...		Lus10022932 [exp]	5.9	0.9528
AT3G05610			Plant invertase/pectin methyle...		Lus10020909 [exp]	6.3	0.9150
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10027372 [exp]	7.2	0.9380

Compare expression of checked genes

Lus10022825 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.