Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60720 42 / 5e-05 PDLP8 plasmodesmata-located protein 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011894 [exp] 249 / 9e-87 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10020927 [exp] 60 / 4e-12 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10033450 [exp] 60 / 4e-12 AT1G19090 45 / 7e-06 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10028019 [exp] 59 / 8e-12 AT1G70530 44 / 8e-06 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) Lus10033389 [exp] 59 / 9e-12 AT1G19090 44 / 2e-05 CYSTEINE-RICH RLK \(RECEPTOR-LIKE PROTEIN KINASE\) 1, receptor-like serine/threonine kinase 2 (.1) Lus10012369 [exp] 57 / 4e-11 AT4G11470 42 / 6e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 31 (.1) Lus10015472 [exp] 57 / 5e-11 AT5G48540 42 / 4e-05 receptor-like protein kinase-related family protein (.1) Lus10028018 [exp] 55 / 6e-10 ND 39 / 5e-04 Lus10003752 [exp] 49 / 7e-08 AT1G70690 41 / 9e-05 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 57 / 6e-11 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.010G108100 [exp] 42 / 4e-05 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.011G027900 [exp] 40 / 0.0002 AT4G23180 542 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027800 [exp] 40 / 0.0002 AT4G23180 516 / 9e-176 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10022828 pacid=23159922 polypeptide=Lus10022828 locus=Lus10022828.g ID=Lus10022828.BGIv1.0 annot-version=v1.0 ATGAAAGGAATAAATACAATCCCGTCGCTATTGCTCCTTTCAGTCGTCGTCTTTTCTCTCACTTTGACCATCGCGAATGCTGAGCTGGACAAAGGGTTCA TTTCCCGAAACTGCAGCAACGAGAGGTACTCGAAGAACGACGGAGTCAAGCATTCAATCTCCGTGGTGCTCACGCAGCTGGTGTCGGAGGCCGTCGACAG GATAACCGTCCACAACAAGGATTACCGTGCGAAATACCCTTCTAATAATTCCCCTCCATTGGTGTACGGACATGCTTACTGTTGGCGGACTTGGGGGATC CAGTCGACGTGCAGGAGCTGTCTGAAGCAAGCAAAGAGGATGCTCGTTCGCGGGTGCCCCCACAGAGCCGGAGCTTCCATCGAATTGGAGATGTGCTCTT TGCGTTACGAGAAGTTCGAGATCTAG
AA sequence Show only first row Show all	>Lus10022828 pacid=23159922 polypeptide=Lus10022828 locus=Lus10022828.g ID=Lus10022828.BGIv1.0 annot-version=v1.0 MKGINTIPSLLLLSVVVFSLTLTIANAELDKGFISRNCSNERYSKNDGVKHSISVVLTQLVSEAVDRITVHNKDYRAKYPSNNSPPLVYGHAYCWRTWGI QSTCRSCLKQAKRMLVRGCPHRAGASIELEMCSLRYEKFEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10022828 [exp]	0	1

Compare expression of checked genes

Lus10022828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.