Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06090 64 / 2e-13 Plant self-incompatibility protein S1 family (.1) AT4G16295 62 / 7e-13 SPH1 S-protein homologue 1 (.1) AT4G29035 62 / 1e-12 Plant self-incompatibility protein S1 family (.1) AT3G26880 56 / 9e-11 Plant self-incompatibility protein S1 family (.1) AT3G27680 53 / 2e-09 Plant self-incompatibility protein S1 family (.1) AT3G10460 51 / 9e-09 Plant self-incompatibility protein S1 family (.1) AT5G27238 51 / 1e-08 Plant self-incompatibility protein S1 family (.1) AT5G04350 50 / 3e-08 Plant self-incompatibility protein S1 family (.1) AT2G24870 49 / 6e-08 Plant self-incompatibility protein S1 family (.1) AT3G16970 48 / 2e-07 Plant self-incompatibility protein S1 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022826 [exp] 82 / 3e-20 AT4G29035 68 / 5e-15 Plant self-incompatibility protein S1 family (.1) Lus10022835 [exp] 79 / 2e-19 AT3G26880 47 / 2e-07 Plant self-incompatibility protein S1 family (.1) Lus10011892 [exp] 78 / 7e-19 AT4G16295 71 / 3e-16 S-protein homologue 1 (.1) Lus10038163 [exp] 77 / 1e-18 AT3G26880 65 / 3e-14 Plant self-incompatibility protein S1 family (.1) Lus10025935 [exp] 76 / 2e-18 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10025937 [exp] 78 / 7e-18 AT3G26880 68 / 4e-14 Plant self-incompatibility protein S1 family (.1) Lus10022824 [exp] 75 / 8e-18 AT5G04347 67 / 9e-15 Plant self-incompatibility protein S1 family (.1) Lus10038164 [exp] 73 / 4e-17 AT3G26880 68 / 2e-15 Plant self-incompatibility protein S1 family (.1) Lus10011895 [exp] 72 / 2e-16 AT4G29035 72 / 3e-16 Plant self-incompatibility protein S1 family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G066900 [exp] 86 / 6e-22 AT4G29035 85 / 1e-21 Plant self-incompatibility protein S1 family (.1) Potri.002G252500 [exp] 67 / 7e-15 AT4G16295 116 / 9e-34 S-protein homologue 1 (.1) Potri.010G008300 [exp] 59 / 7e-12 AT3G17080 74 / 8e-18 Plant self-incompatibility protein S1 family (.1) Potri.004G199700 [exp] 56 / 2e-10 AT4G16295 69 / 2e-15 S-protein homologue 1 (.1) Potri.004G199801 [exp] 54 / 2e-09 AT4G16295 67 / 2e-14 S-protein homologue 1 (.1) Potri.018G148366 [exp] 47 / 1e-07 AT1G04645 103 / 1e-29 Plant self-incompatibility protein S1 family (.1) Potri.018G148700 [exp] 47 / 4e-07 AT1G04645 88 / 5e-23 Plant self-incompatibility protein S1 family (.1) Potri.006G170200 [exp] 47 / 6e-07 AT5G12060 48 / 1e-07 Plant self-incompatibility protein S1 family (.1) Potri.018G148630 [exp] 45 / 2e-06 AT1G04645 106 / 3e-30 Plant self-incompatibility protein S1 family (.1) Potri.003G201300 [exp] 44 / 4e-06 AT2G06090 65 / 5e-14 Plant self-incompatibility protein S1 family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05938 [flax] [poplar] Self-incomp_S1 Plant self-incompatibility protein S1
Representative CDS sequence Show only first row Show all	>Lus10022831 pacid=23160052 polypeptide=Lus10022831 locus=Lus10022831.g ID=Lus10022831.BGIv1.0 annot-version=v1.0 ATGAATACACTGGAAAAACTCAAAGTTGTGACACTGGTTTTGTGTACCACGACCATCCTAGTATATCCTGGTCCCTCGACGCATCAATACAGTGTCCATA TTACCAACAATTTAACCGGCTCGAGAGACCTCGCAGTGCACTGCCAATCGAAAGACGACGATCTTGGGGTCCAATCCAGAGCCTATAACGACGAGTTCTG TTGGAGTTTTGATGTGAATTTTTTTGGAGGGACACTGTTTTGGTGCGACCTCGCTGTGGCCGGAGATGGTGGTCATATGAGTCTTTCTATGGTGGCGTTC AAGCAAGGTAGTAAATTTATTGGGAACGGCGATGTTCGATGGTTTGCTAGGGACGATGGAGTTTATCTCGAGGTATTCCTCGATAAAAACCGCCGAGTGC AATACTATGCAATATGGGCTCATTGGAGTTCTTGA
AA sequence Show only first row Show all	>Lus10022831 pacid=23160052 polypeptide=Lus10022831 locus=Lus10022831.g ID=Lus10022831.BGIv1.0 annot-version=v1.0 MNTLEKLKVVTLVLCTTTILVYPGPSTHQYSVHITNNLTGSRDLAVHCQSKDDDLGVQSRAYNDEFCWSFDVNFFGGTLFWCDLAVAGDGGHMSLSMVAF KQGSKFIGNGDVRWFARDDGVYLEVFLDKNRRVQYYAIWAHWSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06090			Plant self-incompatibility pro...		Lus10022831 [exp]	0	1
					Lus10024141 [exp]	9.8	0.7368
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Lus10000677 [exp]	13.9	0.7368
AT2G15220			Plant basic secretory protein ...		Lus10001608 [exp]	17.0	0.7368
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10005144 [exp]	19.6	0.7368
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10027988 [exp]	21.9	0.7368
					Lus10013255 [exp]	24.0	0.7368
					Lus10013259 [exp]	25.9	0.7368
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Lus10013964 [exp]	27.7	0.7368
AT3G06240			F-box family protein (.1)		Lus10014136 [exp]	29.4	0.7368
					Lus10028570 [exp]	31.0	0.7368

Compare expression of checked genes

Lus10022831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.