Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038309 [exp] 523 / 0 ND / Lus10024122 [exp] 383 / 4e-128 ND / Lus10005392 [exp] 380 / 8e-127 ND / Lus10029057 [exp] 327 / 4e-106 ND / Lus10024121 [exp] 318 / 2e-102 ND / Lus10008536 [exp] 299 / 2e-98 ND / Lus10006341 [exp] 301 / 8e-98 ND / Lus10005393 [exp] 286 / 1e-91 ND / Lus10023559 [exp] 274 / 5e-86 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G388801 [exp] 459 / 5e-158 ND / Potri.011G047300 [exp] 456 / 1e-156 ND / Potri.001G387900 [exp] 455 / 2e-156 ND / Potri.001G388600 [exp] 455 / 2e-156 ND / Potri.001G388450 [exp] 455 / 2e-156 ND / Potri.001G388100 [exp] 453 / 2e-156 ND / Potri.001G388200 [exp] 453 / 1e-155 ND / Potri.011G108300 [exp] 407 / 4e-138 ND / Potri.001G388900 [exp] 389 / 8e-131 ND / Potri.011G108200 [exp] 345 / 2e-113 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0122 [flax] [poplar] UTRA PF12143 [flax] [poplar] PPO1_KFDV Protein of unknown function (DUF_B2219) CL0205 [flax] [poplar] Di-copper PF00264 [flax] [poplar] Tyrosinase Common central domain of tyrosinase CL0205 [flax] [poplar] PF12142 [flax] [poplar] PPO1_DWL Polyphenol oxidase middle domain
Representative CDS sequence Show only first row Show all	>Lus10022836 pacid=23159983 polypeptide=Lus10022836 locus=Lus10022836.g ID=Lus10022836.BGIv1.0 annot-version=v1.0 ATGAAATCTCTACCGGACGACGACCCGAGGAGCTTCAAGAAGCAAGCCGACGTCCACTGCGCGTACTGCAACGGAGCATACGACCAAGTCGGGTTTCCAG ACGCCCCGCTCCAGGTCCACTTCTCGTGGCTGTTTTACCCCTTCCACCGCTTCTACCTCTATTTCTTCGAGAGGATCTTGGGGAAACTCATCGACGACCC GACTTTCGCGATTCCGTACTGGAACTGGGACTCACCCGCCGGGATGCAGATGCCGGCGATTTTCGCCGGTACTAATTCGCCGCTCTACGACCCGCTCCGG AACCCAAGCCATGCCCCGCCGTTTTTATTGGATTTGGATTGGAGTAATACAGACGAGGAGGGTATAATTACTCCCGAGGAGCAGTACAAGAGCAATCTGA GGACGATGTACACGCAGATGGTCTCCGGTGCGAAGAAGCGGACGTTGTTTTTCGGGACGCCGGTGAAGGCAGGTGACACGGCTGCGACTGCGGGTCAAGG GACGATTGAGCGGACCCCACATGCGAATGTTCATATATGGACCGGAGACCAGAAGCAGCCTTATAAGGAGAATATGGGTAATTTTTACTCGGCGGGTCGG GACCCCATTTTTTACTGCCACCATGGCAATGTGGATAGGATGTGGGACGTTTGGAAGAGTTTGGGGCCCAAGAGGACGGATTTTACCGACCCGGATTGGC TGGAGGCGGGTTTTTCGTTCTATGATGAGGATAAGAATCTGGTGAGGTGTAAGGTTAAGGATTCCCTTGATTCCAGGAAGCTTAACTATCAATACCAACA GGTCCCAATCCCATGGTTGGACACCAAGAGAACACCAAAGGCGAAGAAGAAAACAACGGCCAATAATCCATTCACAAGCGAGGTCAAATCAGCAAACGCC GCTCCTAACAAACGTCGAGAGTTGACGCCGTTATCAGCATTCCCCGTGGCGTTGACCAAGGCAATAAGTGTCGTGGTGCCGAGGCCGAAGAGGTCACGGA GCGCAACGGAGAAGGACGACGAGGAGGAGGTGCTGGTGGTGGAAGGGATCGAGCTCGACAGCGAAGAGGTTGCAAAGTTCGACGTGGCTTTGAATGACGA CGACGATGGAGCACCCGCGGGACCGCAAGACACGGAGTTTGCAGGGACTTTTGTCAATGTTCCGCATAAGGAGAAGGCAGGCGGGGCGGCTCCGAGCTAT CAGATGGCGTTGAGGCTTGGCATTACGGATTTGTTGGAGGATTTGGGTGCTGATGACGATGATAGTGTGGTTGTGACTTTGGTGCCCAAGGTTGGGGAGG TTAGGATCGGTGGAGTTAGAATTGAATACATCACTGACTAA
AA sequence Show only first row Show all	>Lus10022836 pacid=23159983 polypeptide=Lus10022836 locus=Lus10022836.g ID=Lus10022836.BGIv1.0 annot-version=v1.0 MKSLPDDDPRSFKKQADVHCAYCNGAYDQVGFPDAPLQVHFSWLFYPFHRFYLYFFERILGKLIDDPTFAIPYWNWDSPAGMQMPAIFAGTNSPLYDPLR NPSHAPPFLLDLDWSNTDEEGIITPEEQYKSNLRTMYTQMVSGAKKRTLFFGTPVKAGDTAATAGQGTIERTPHANVHIWTGDQKQPYKENMGNFYSAGR DPIFYCHHGNVDRMWDVWKSLGPKRTDFTDPDWLEAGFSFYDEDKNLVRCKVKDSLDSRKLNYQYQQVPIPWLDTKRTPKAKKKTTANNPFTSEVKSANA APNKRRELTPLSAFPVALTKAISVVVPRPKRSRSATEKDDEEEVLVVEGIELDSEEVAKFDVALNDDDDGAPAGPQDTEFAGTFVNVPHKEKAGGAAPSY QMALRLGITDLLEDLGADDDDSVVVTLVPKVGEVRIGGVRIEYITD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022836 [exp]	0	1
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	6.0	0.8451
AT4G37810			unknown protein		Lus10028241 [exp]	6.5	0.7362
AT2G34790		MEE23, EDA28	MATERNAL EFFECT EMBRYO ARREST ...		Lus10008408 [exp]	6.6	0.7355
AT5G19875			unknown protein		Lus10006311 [exp]	11.1	0.8214
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	17.1	0.8179
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	18.6	0.8153
					Lus10007080 [exp]	19.3	0.7200
AT5G64620		ATC/VIF2, C/VIF...	cell wall / vacuolar inhibitor...		Lus10029877 [exp]	23.0	0.6403
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	26.0	0.8157
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	27.0	0.7900

Compare expression of checked genes

Lus10022836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.