Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62440 84 / 2e-18 Protein of unknown function (DUF3223) (.1) AT1G45230 45 / 6e-05 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT2G40030 45 / 9e-05 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011903 [exp] 372 / 3e-124 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10024794 [exp] 242 / 5e-75 AT5G62440 95 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10009570 [exp] 244 / 1e-74 AT5G62440 88 / 7e-20 Protein of unknown function (DUF3223) (.1) Lus10024968 [exp] 236 / 5e-72 AT5G62440 90 / 1e-20 Protein of unknown function (DUF3223) (.1) Lus10002053 [exp] 139 / 4e-36 AT5G62440 98 / 2e-23 Protein of unknown function (DUF3223) (.1) Lus10023594 [exp] 132 / 1e-34 AT5G62440 96 / 1e-23 Protein of unknown function (DUF3223) (.1) Lus10024824 [exp] 127 / 2e-32 AT5G62440 84 / 8e-19 Protein of unknown function (DUF3223) (.1) Lus10021669 [exp] 80 / 4e-17 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 80 / 7e-17 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033100 [exp] 90 / 4e-20 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 65 / 7e-12 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 63 / 1e-11 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.002G125700 [exp] 45 / 6e-05 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G028300 [exp] 44 / 6e-05 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G023400 [exp] 42 / 0.0004 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.014G023200 [exp] 42 / 0.0004 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10022837 pacid=23160061 polypeptide=Lus10022837 locus=Lus10022837.g ID=Lus10022837.BGIv1.0 annot-version=v1.0 ATGGCCAATCCAGAGGTAGTTGTGAAGCGAGAGAGGGACGAGATTCCGGAATCAGCGATCGGCGTAACCTATGACGTCGAGAAGAAGGCGAAGCTGGAAA ACGACGTCGTCGGAACAGAGGCGGTGGTCCGTTTGGGTACGCAGGAATTCGCGAGTTCCCGTCAGATGTTTGAAACTCTCCAAGGGTGGCTTATGCCCTG TTGGACCTCAGTTCAACCCCTGTTGCATCAGCAGGATTGCGAGCCGATGCTACTGGACTTAGTGAAGAAGGGTCATCCCGAGCCAGATAAAATGATCGGT TGTGGGGTCGATTCATTTCAAGCACGATTGGACGGGATGTGCAGCGATTTCCTCACCTTCTTCGTCGTCAGGAAAGATGGTTCTACGGCGGATTTCTGCT TCAGGAGCTGTGTAAACAATATCCTCCCGTTGCCTCATGATTTGAAAGATCAAGGTTGCGGTGTTGTTGCTGTTTGCGCATGTCTTGTAGGAGGAGGCAT GATGTTTTTGGAGACTGCTAGACGGATGGAGGCCAACTCCGTCGTCTTGGGTTCGATGAAATTCAACTCCTCCTATCATACGTATAGTGTTTTTTTCCAG TTGCTTATCAGGTCGCCACTTAACGAGGCTCTCGGCGAGATTGAGCAAACCGCAATGTTGAGTTTGCTGAAGAAGGGTGATCCAGAGAGGTGGGAGAAGA AGAAGATGGGTTCTGGAGCAGATATCCAATCAATCGAAAGACGACGCCACCCATACATTGGGGTGTTGCACCCACTCTTCGGTGTTGTTAGGAAGGATGG CCGTCATATGGAGTATTTCTGCTACAAGAAATGCATCGACAAACTATTCCCCCCGCCAATGGGTCATCAACGCCTATGCTCTGCGTATGGTGATTGCACT GTTAACAGTCGCCTTAGAAGAAGTAACGGCGGTCGAGGTCGAGGCCAGCGAAATAATCTGGAGTTGCAAGTGCAGAATCAGCAAGAACAAATTGAAATCT TGAACAAATTGAATGATGCTCGCCAAGAGTACATCCAAGACTTGAAGAAGTACATCCAAAAGAATGGGCTTCCTCCTCCCCCTTCCCCAGCCTCCCCATT GCTAAACGTTACCCAGATGGAGAAGGAAAATGGAGTCCCCCGTGATGTAAAGGAGGAGAAAATGCTGTTCTCTCCCAAATTTTGGGAGCAATTCTTGCAC TGCCGGAACAACACCGCCGCCCCAGCCCTCTCCTCTTCCCCAATCCCCCAACACCACCCAACACCACCCAACACCAAACAACCTTCATCTGATCCAAACC CCGACTCACCCATCACCACTGTTACAATCCCCACCATCACTTTTGAAGCCGCCATGCCCTCTGTTATCGAAACCGCCAACACCAACTTGACTGCGACCGA GTTGGTGACCGGAAAAACCGATGTCGATATCAAGCTTGTAGCCTTACGAGATCCATCAAGGAGGTTACACTGA
AA sequence Show only first row Show all	>Lus10022837 pacid=23160061 polypeptide=Lus10022837 locus=Lus10022837.g ID=Lus10022837.BGIv1.0 annot-version=v1.0 MANPEVVVKRERDEIPESAIGVTYDVEKKAKLENDVVGTEAVVRLGTQEFASSRQMFETLQGWLMPCWTSVQPLLHQQDCEPMLLDLVKKGHPEPDKMIG CGVDSFQARLDGMCSDFLTFFVVRKDGSTADFCFRSCVNNILPLPHDLKDQGCGVVAVCACLVGGGMMFLETARRMEANSVVLGSMKFNSSYHTYSVFFQ LLIRSPLNEALGEIEQTAMLSLLKKGDPERWEKKKMGSGADIQSIERRRHPYIGVLHPLFGVVRKDGRHMEYFCYKKCIDKLFPPPMGHQRLCSAYGDCT VNSRLRRSNGGRGRGQRNNLELQVQNQQEQIEILNKLNDARQEYIQDLKKYIQKNGLPPPPSPASPLLNVTQMEKENGVPRDVKEEKMLFSPKFWEQFLH CRNNTAAPALSSSPIPQHHPTPPNTKQPSSDPNPDSPITTVTIPTITFEAAMPSVIETANTNLTATELVTGKTDVDIKLVALRDPSRRLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62440			Protein of unknown function (D...		Lus10022837 [exp]	0	1
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10042336 [exp]	1.0	0.9900
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10021239 [exp]	5.3	0.9499
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	5.3	0.9681
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10026025 [exp]	6.0	0.8661
					Lus10000984 [exp]	6.5	0.9681
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	7.5	0.9681
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10005439 [exp]	8.4	0.9681
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	9.2	0.9681
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	9.9	0.9681
					Lus10032805 [exp]	10.6	0.9681

Compare expression of checked genes

Lus10022837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.