Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20190 717 / 0 ATCLASP CLIP-associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011907 [exp] 1116 / 0 AT2G20190 2090 / 0.0 CLIP-associated protein (.1) Lus10011904 [exp] 109 / 6e-27 AT2G20190 96 / 9e-23 CLIP-associated protein (.1) Lus10029708 [exp] 77 / 7e-17 AT2G20190 69 / 7e-15 CLIP-associated protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253200 [exp] 883 / 0 AT2G20190 2103 / 0.0 CLIP-associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10022838 pacid=23159967 polypeptide=Lus10022838 locus=Lus10022838.g ID=Lus10022838.BGIv1.0 annot-version=v1.0 ATGGAAAGGATCTTACCCCATGTTTTCTCAAGATTGATTGATCCCAAAGAGCTAGTTAGGCAACCTTGTTCAACGACCTTGGATATCGTGGGAAAAACTT ATGGTGTTGATACCCTCTTACCTGCACTTCTTCGCTCACTGGATGAACAAAGGTCACCAAAGGCCAAATTGGCTGTGATTGAGTTTGCTATTGGTTCGTT TAACAAACACGGAATGAACTCGGAAGGTGCGGGCAATACTGGCATTCTGAAGTTATGGCTTGCCAAGTTGGCACCATTAGCTCATGATAAAAACACGAAG TTGAAGGAAGCAGCAATTACATGTATTATATCTGTCTACTCCAATTTTGATTCATCGGCTGTCCTCAATTTTATACTTTGTTTATCCGTGGAAGAGCAAA ATTCCCTGAGAAGAGCTCTTAAACAGTACACTCCTCGTATTGAAGTGGACCTGATGAACTTCTTACAGAGCAAGAAAGAACGACAACGATCAAAGTCGGC TTATGATCCATCTGATGTTGTTGGAACATCTTCAGATGATGGGTATATTGGTTCATCAAAGAAGAGTTATTACCTTGGCAGGTATTCTGGTGGTTCGGTT GATAGTGATAGTGGCAGGAAATGGCACTCCACTCAAGATTCAGCACATGTAACAGGGGGTATTGGTCAAACTGCTTCTGATGAAACTCAGGAGACCTATT ATCAGAACTTTGAGGCTAATTCTAATCTTGATGATGGCCATGGTTCAAGATCTAGGGATTTGGGTTACACGTGTAATAGTTCGTCTATAAGTCAAACCAT GGCGTCCTGGCCCGGCCCCGTAGAAAGCTTGGACGATTCCTTGAACCATGAAGGTCTTTCGACTCCTCGTTTGGATGTTAACGGAAGAACGAATACTGAA CCCTTGGCAGTTTCTGAAGGCTATGCACACAATCCTGATTCTCTATCTGAGATGTACCTGAGCAATTTAAAGCCTGCTGCTATAAAAGTCAATTCTGCTG GAGATGGCGGTCCAAGTATTCCTCAAATTCTCCATGTGATTTGTAATGCTAGCGATGAAAACCCTTCAGCAAGCAAGCGAGGAGCAATTCAGCAGTTAAT TGAAGCTTCTACGGCTAATGATCACTCAGTTTGGTCCAATTACTTCAATCAGATCCTGACAGCGGTTCTCGAGGTATTGGATGATTCGGATTCCTCGGTC CAGGAACACGCTCTCTTATTGATTGTAGAAATCTTGAAAAACCAGAAAGATGCCATGGAGGAATCCATTGAGATTGTCATTGAGAAGCTGCTTCACGTAG CAAAGGATGGTGTACCAAAGGTTTCTAATGAGGCTGAGAATTGCTTGAATATCATATTGTCTCAATACGACCCGTACAGATCTTTGAGTGTTATCGTTCC TTTGCTTGTGACTGAAGATGAGAAAACTCTTGTAACTTCCATAAGCTGTTTGACAAAGCTCGTTGGCCGGCTCTCCCAGGAGGAGCTAATGACCCAGCTG TCCTCATTTTTGCCTGCACTCTTTGAAGCTTTCAACAACCAGAGTGCCGATGTTCGCAAGACCGTGGTCTTCTGCCTGGTGGACATATACATCATGCTTG GGAAATCCTTCTTGCCATACCTGGAAGGACTCAACACTATGCAGTTGAAGTTGGTCACTATCTACGCGAATCGGATATCGCAGGCCAGAACGGGTGCTCC CATTGACAACGGCCAGGCCTAG
AA sequence Show only first row Show all	>Lus10022838 pacid=23159967 polypeptide=Lus10022838 locus=Lus10022838.g ID=Lus10022838.BGIv1.0 annot-version=v1.0 MERILPHVFSRLIDPKELVRQPCSTTLDIVGKTYGVDTLLPALLRSLDEQRSPKAKLAVIEFAIGSFNKHGMNSEGAGNTGILKLWLAKLAPLAHDKNTK LKEAAITCIISVYSNFDSSAVLNFILCLSVEEQNSLRRALKQYTPRIEVDLMNFLQSKKERQRSKSAYDPSDVVGTSSDDGYIGSSKKSYYLGRYSGGSV DSDSGRKWHSTQDSAHVTGGIGQTASDETQETYYQNFEANSNLDDGHGSRSRDLGYTCNSSSISQTMASWPGPVESLDDSLNHEGLSTPRLDVNGRTNTE PLAVSEGYAHNPDSLSEMYLSNLKPAAIKVNSAGDGGPSIPQILHVICNASDENPSASKRGAIQQLIEASTANDHSVWSNYFNQILTAVLEVLDDSDSSV QEHALLLIVEILKNQKDAMEESIEIVIEKLLHVAKDGVPKVSNEAENCLNIILSQYDPYRSLSVIVPLLVTEDEKTLVTSISCLTKLVGRLSQEELMTQL SSFLPALFEAFNNQSADVRKTVVFCLVDIYIMLGKSFLPYLEGLNTMQLKLVTIYANRISQARTGAPIDNGQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022838 [exp]	0	1
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10040499 [exp]	1.7	0.9494
AT3G20250		APUM5	pumilio 5 (.1)		Lus10033353 [exp]	2.0	0.9539
AT3G20250		APUM5	pumilio 5 (.1)		Lus10034808 [exp]	5.7	0.9558
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	13.6	0.9430
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10015513 [exp]	14.6	0.8892
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	20.6	0.9382
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10027931 [exp]	21.2	0.9399
AT4G12570		UPL5	ubiquitin protein ligase 5 (.1...		Lus10010493 [exp]	21.6	0.9084
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Lus10005854 [exp]	22.0	0.9313
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	23.2	0.9433

Compare expression of checked genes

Lus10022838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.