Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20190 1058 / 0 ATCLASP CLIP-associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011907 [exp] 1349 / 0 AT2G20190 2090 / 0.0 CLIP-associated protein (.1) Lus10011904 [exp] 98 / 9e-23 AT2G20190 96 / 9e-23 CLIP-associated protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253200 [exp] 1150 / 0 AT2G20190 2103 / 0.0 CLIP-associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF12348 [flax] [poplar] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Lus10022839 pacid=23160067 polypeptide=Lus10022839 locus=Lus10022839.g ID=Lus10022839.BGIv1.0 annot-version=v1.0 ATGGAAGAGGCGCTGGAACTGGCGCGTGCCAAGGACACCAAGGAGCGCATGGCAGGAGTGGAGAGGCTGCACCAGCATCTTGAAGCTTCTAGGAGGAGCT TGAGCTCGTCCGAGACGACTGCGCTGGTTGACTGCTGCATGGATCTTCTCAAGGACAATAACTTCAAGGTCTCTCAAGGTGCTCTCCAGGCTCTGGCGTC TGCTGCCGTGTTGTCCGGCGAGCATTTCAAGTTGCATTTCAATGCGCTTGTTCCGGCTGTTGTTGAGCGGCTCGGTGATGCTAAGCAGCCTGTTAGGGAC GCTGCTCGGCGGCTGTTGCTCACGCTGATGGAGGTTTCTTCCCCCACAATCATTGTCGAAAGGGCTGGCTCTTATGCCTGGACTCATAAAAGCTGGAGAG TGCGTGAAGAATTTGCTCGAACTGTTGCATCTGCAATTGGTCTTTTTGGATCAACTGAGCTTCCTTTGCAGCGAGCTATACTTCCTCCTATTCTGCAGAT GTTGAGCGATCCAAATCCCGGTGTCAGGGAAGCAGCTATATTATGTATTGAGGAGATGTACACGCAGGCTGGTACACAGTTCCGTGATGAACTTCTGCGC CACCATATTCCCATGTCAATGATGAAAGATATTAATGCGAGGTTGGAAAAAATTGAACCTAAAGTACGTTCTTCAGATGGGATCTCAAATAATTATGGGG CTATAGACGTGAAGCCCATTAGTGTGAGTAGCAAAAGAAGTAGTCCAAAGGCAAAGAGTTCGTCAAGGGAGGTTTCTCTTTTTGGAGGAGAATCTGATAT GGCCGAGAAGCCCATAGAACCATATAAAGTTTACTCAGAAAAAGAGCTGATTAGGGAATTCGAGAAGATCGCTGCCACCCTCGTGCCGGAGAAGGATTGG TCTGTACGTATAGCTGCCTTGCAGAGAGTTGAAGCTCTTGTATTGGGAGGTGCTACTGACTACTCCTCCTTCCGAGGACTTCTGAAACAACTTGTTGGTC CTCTAAGCACTCAGCTTTCTGATAGAAGATCCAGCATTGTGAAGCAAGCCTGTCACCTGTTATGCTTCTTATCGAAGGACCTTTTGGGTGACTTTGAGCC GTATGCTGAGATGTTTATTCCTGTACTTTTCAAGCTTGTAGTGATCACTGTACTTGTAATTGCTGAATCAGCAGACAACTGCATAAAGACGATGTTGCGC AACTGCAAAGCTGCACGAGTGCTTCCTCGTGTAGCTGACTCGGCTAAAAATGACAGGAATGCAATACTCCGTGCAAGATGTTGTGAGTACGCATTATTGA TTCTTGAACACTGGCCGGATGCTCCAGAAATACAGCGGTCAGCTGATCTATATGAGGATCTAATAAGGTGCTGTGTTTCAGATGCAATGAGCGAGGTAAG ATCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAGACTTGGCCAGAGCGTTCCCGTCGCTTGTTTTCATCCTTTGATCCTGTTATCCAGCGGATAATT AATGAAGAGGATGGTGGCTTGCATAGGAGACATGCGTCACCATCTCTTCGAGATAGAAGTACATCCAGTTCATATGCACCTCAAGTGTCTGCTTCTTCAA ATTTATCTGGATATGGTACTTCTGCCATCGTTGCAATGAACCGAACCTCAAGCTTGTCCACTGGTACGTCACTGGCATCTGGGCTTCTACTGTCACAGGC AAAGCCTGCTGGTAAAGGCACCGAACGAAGTCTTGAAAGTGTATTGCATGCAAGTAAACAAAAGGTCAGTGCTATTGAAAGCATGCTTAGAGGGCTGGAG ATATCTGATAAACAAAATCCCGCCTCCCTGCGGTCATCGAGCTTGGACCTAGGAGTTGACCCTCCATCATCTCGTGATCCGCCATTCCCAGCTTCAAGTA ATCTCTCCAGCTCTTTATCTGTGGACTCAACCGTGTCTAGCATCAATAAAGGGAGCCGCAATGGAGGCTTGGTCTTGTCTGATATTATCACTCAAATTCA AGCTTCCAAAGACTCTGCTAAGTTATCATATCGTGGTGGGCTGGGCGAGTCTGTGCCATCGTTTTCATCTTACACGGCCAAAAGGAGTTCTGATAGATTG CAAGACAGAGGTATGATGAATGAGAACAATGACATCAGAGAGGCAAGGCGCGTAATGAACCCACAAAGCGACAGGCATTACCAAGACACACCTAACAGAG ATGGAAATTTTCGGGATTCACAGAACAGTCATGTCCCCAACTTCCAAAGGCCACTTTTAAGAAAACATGTGGTGGGGCGAATGTCTGCTGGCAGGAGAAA AAGCTTTGATGATAGTCAACTTTTCGTTGGGGAGATTGCCAATTATGTTGTTTTTCCAACACTTGGACGATCCCCACCATAA
AA sequence Show only first row Show all	>Lus10022839 pacid=23160067 polypeptide=Lus10022839 locus=Lus10022839.g ID=Lus10022839.BGIv1.0 annot-version=v1.0 MEEALELARAKDTKERMAGVERLHQHLEASRRSLSSSETTALVDCCMDLLKDNNFKVSQGALQALASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRD AARRLLLTLMEVSSPTIIVERAGSYAWTHKSWRVREEFARTVASAIGLFGSTELPLQRAILPPILQMLSDPNPGVREAAILCIEEMYTQAGTQFRDELLR HHIPMSMMKDINARLEKIEPKVRSSDGISNNYGAIDVKPISVSSKRSSPKAKSSSREVSLFGGESDMAEKPIEPYKVYSEKELIREFEKIAATLVPEKDW SVRIAALQRVEALVLGGATDYSSFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKDLLGDFEPYAEMFIPVLFKLVVITVLVIAESADNCIKTMLR NCKAARVLPRVADSAKNDRNAILRARCCEYALLILEHWPDAPEIQRSADLYEDLIRCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPVIQRII NEEDGGLHRRHASPSLRDRSTSSSYAPQVSASSNLSGYGTSAIVAMNRTSSLSTGTSLASGLLLSQAKPAGKGTERSLESVLHASKQKVSAIESMLRGLE ISDKQNPASLRSSSLDLGVDPPSSRDPPFPASSNLSSSLSVDSTVSSINKGSRNGGLVLSDIITQIQASKDSAKLSYRGGLGESVPSFSSYTAKRSSDRL QDRGMMNENNDIREARRVMNPQSDRHYQDTPNRDGNFRDSQNSHVPNFQRPLLRKHVVGRMSAGRRKSFDDSQLFVGEIANYVVFPTLGRSPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10022839 [exp]	0	1
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10011907 [exp]	1.0	0.9677
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	2.4	0.9365
AT5G12370		SEC10	exocyst complex component sec1...		Lus10007908 [exp]	3.0	0.9342
AT1G15680			F-box family protein (.1)		Lus10007302 [exp]	4.0	0.8933
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	4.7	0.8995
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	5.5	0.9063
AT5G15680			ARM repeat superfamily protein...		Lus10035141 [exp]	6.0	0.8899
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10026018 [exp]	7.7	0.8867
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	8.0	0.9218
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	8.8	0.9060

Compare expression of checked genes

Lus10022839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.