Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20210 218 / 2e-64 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011909 [exp] 645 / 0 AT2G20210 441 / 1e-148 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G194800 [exp] 354 / 6e-117 AT2G20210 527 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10022840 pacid=23160064 polypeptide=Lus10022840 locus=Lus10022840.g ID=Lus10022840.BGIv1.0 annot-version=v1.0 ATGTTACGACCTCCGTCTCTGGTATCATTGATATTGGAAGTAATCAAACAACAACTTATTCGTGGTGAAGAAGATGTTTGCATTCATGAGCTTCCGGACC ACTTGCTTGAGGCCTTGATCGCGAAGCTACCTCCTGTGGGATTGCTGGCTTTGGAACGTTCTATGCCATTTGTGGAGTCTGATGGCTACGAGCTTGTTAA TGAGACAAATGGACGAAAGCGTGGAAGGTGCAGGAGATTCAATAAAGGCTGGGAGGCATGGTTCAAGTTGCGGTGGCCGAGAATCATGGACCGGGTTCAG GCCGACGACTGGAAGCAGATTTTTTTTGATGAAGCAGTGGCGTCGGCTGTCCTCCCTTCATTTGATGGATGTATTGCTGATCTTAGAATTTCAGAAAGAA CCCTTAAATGTATCGGATATGAAGGTCTTATGGACAATCGCGAAATTTTGAAGTTATCATACCACTGTCGGCAATTTGGAGCTCATGCACGATTGCTGCG ACTTCAGAGTGTTTTTTGTGGTGAAGAAACTTGTGTAAATTTCTTACTGGTTCGAGGATTGTGCAGCCTGCTGATACAAAACAGAGAAACATTAACATCC GTTCAGTTTATCCACAGCAACTTGTCATCAACATTATTCAGTGCACTATGTTTTTCCATAAACGGAACCGAGATTAAGAGTTCACTGCCAGCATATCAAG CTTTACTGAAAGGAATGCAGTTTCCATTCCTCTTGGACTCAAGTCGTTCCTTTCGTCAAACTGCTGGATGGCTGTCTAATTTTAACCGAAGGGACTTCAA CAAATCTCAATCATCTTTGGGAGTCGACATATTTCCGCAATCTCTACGGGTTCTTAACATAAGGGGAAATAATCTTCAAGAGGAAGACATGATATGCCTT AGACAAGCACTGGTGTACATGCCAAACTTGGAGGTCCTTGACATAAGCGACAATCCCATTAAGGATGATGGAGTCAGATGTTTAGTTCCTTATTTCGCCG AGGCCTCCAAAGGATGCTTCGCCTTGGTCGATTTGAAGTTAGATAATTGCATCGGATTGGGCTCAGTTGGCTTCCAGGAGCTGCAGAAAAGGACTACGAC GAAGCTAACTCTTGCTGACATCAATATGAGCAAAACCCGTGGCGGCCTAGAAACTGCGAGATTCGTATGCAATCTGTTATCATTTGCTCCAGAGATAACG AGGATAAATGCAGCGTATAATCTCATGCAGTCGGAATCGTTATCCTTATTATGCTCTGCCCTGAAGGCCACACCAGGTACTAATCTCCAGTATTAA
AA sequence Show only first row Show all	>Lus10022840 pacid=23160064 polypeptide=Lus10022840 locus=Lus10022840.g ID=Lus10022840.BGIv1.0 annot-version=v1.0 MLRPPSLVSLILEVIKQQLIRGEEDVCIHELPDHLLEALIAKLPPVGLLALERSMPFVESDGYELVNETNGRKRGRCRRFNKGWEAWFKLRWPRIMDRVQ ADDWKQIFFDEAVASAVLPSFDGCIADLRISERTLKCIGYEGLMDNREILKLSYHCRQFGAHARLLRLQSVFCGEETCVNFLLVRGLCSLLIQNRETLTS VQFIHSNLSSTLFSALCFSINGTEIKSSLPAYQALLKGMQFPFLLDSSRSFRQTAGWLSNFNRRDFNKSQSSLGVDIFPQSLRVLNIRGNNLQEEDMICL RQALVYMPNLEVLDISDNPIKDDGVRCLVPYFAEASKGCFALVDLKLDNCIGLGSVGFQELQKRTTTKLTLADINMSKTRGGLETARFVCNLLSFAPEIT RINAAYNLMQSESLSLLCSALKATPGTNLQY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20210			RNI-like superfamily protein (...		Lus10022840 [exp]	0	1
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	15.8	0.9150
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10034296 [exp]	21.5	0.9071
					Lus10004450 [exp]	29.2	0.8861
					Lus10018670 [exp]	38.6	0.8798
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10031046 [exp]	42.8	0.8809
AT1G49770	bHLH	ZOU, RGE1, bHLH...	ZHOUPI, RETARDED GROWTH OF EMB...		Lus10018723 [exp]	48.2	0.9069
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Lus10029572 [exp]	51.4	0.9057
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036324 [exp]	57.6	0.9000
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10004225 [exp]	59.9	0.9003
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	61.9	0.9017

Compare expression of checked genes

Lus10022840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.