Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20230 228 / 3e-74 Tetraspanin family protein (.1) AT4G28770 208 / 2e-66 Tetraspanin family protein (.1.2) AT2G20740 112 / 3e-30 Tetraspanin family protein (.1.2.3) AT1G32400 78 / 1e-16 TOM2A tobamovirus multiplication 2A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011910 [exp] 362 / 2e-127 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1) Lus10039817 [exp] 89 / 1e-20 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3) Lus10030939 [exp] 89 / 1e-20 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3) Lus10011042 [exp] 86 / 1e-19 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3) Lus10018584 [exp] 83 / 1e-18 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3) Lus10003011 [exp] 79 / 5e-17 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3) Lus10040108 [exp] 67 / 4e-13 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253500 [exp] 249 / 9e-83 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1) Potri.001G146100 [exp] 87 / 5e-20 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.019G101800 [exp] 83 / 5e-19 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3) Potri.003G087800 [exp] 84 / 6e-19 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.011G050900 [exp] 81 / 2e-18 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3) Potri.013G134200 [exp] 81 / 6e-18 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3) Potri.004G041500 [exp] 77 / 7e-17 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3) Potri.018G038400 [exp] 45 / 2e-05 AT2G20740 109 / 4e-29 Tetraspanin family protein (.1.2.3) Potri.006G241400 [exp] 42 / 0.0002 AT2G20740 108 / 1e-28 Tetraspanin family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10022841 pacid=23159976 polypeptide=Lus10022841 locus=Lus10022841.g ID=Lus10022841.BGIv1.0 annot-version=v1.0 ATGCGTCCCAATTGCTGCCATGTTTCCCTCGCATTTCTCCTCAAGTTCTTCAATTTCCTTCAGGCCTTCCTCGGTATCTCCATCATCCTCTATTCCGTTT GGATGCTTGATCAATGGAACCACCACCTCCCCGTCTCTCCTCCGCCGTTCCCAGCTCCTTCTTCATCATCTTCTTCCTCCGTCGTCCTTTCCCGATCGCA CTCAATTACGACGACCCTCGATCTCGCCTCTCAGATGGAGTTATCCAGCCTCGGCGTTTACTTCAATTCCGTCGACCTTCCAGCTCCTTGGTTCATCTAC TCCTTTATGGGTGTGGGCGCCATAATATGCTGCATCACTTTCATTGGTTGCATTGCAGCTGAAGCTATCCATGGCTGTTGCCTATGCTTTTACACCGTCC TGAAAGTTCTTCTCATTCTGCTAGAAGCAGCTTTGATTGCTTTCATTGCGATTGATCGTCACTGGGAAAAGGATATTCCATTTGATCCAACTGGAGAAGT TCAAAGTATTCGAGCTTTTATTGAAGACAACATCGAGATATGTAAATGGGTTGGCATAACAGTGGTTGTTGTTCAGGCTGTGTCTTTGCTGCTTGCCATG GTTCTGCGAGGTTTGGTTGCCACTCCCAAGAGCGATATTGATGGAGAGGATGATTATGAGACTGGTAGAAGTAGAAGATGGGAACCACTCTTAGGCCAAC CAGGCCAAACATCCGGATCAGGGACAGGATCAGACATTTGGAGCTCCAGAATGAGGGAAAAGTATGGACTAAACGGCAATGAGAACCCTGCCATGAAATC CAAATAA
AA sequence Show only first row Show all	>Lus10022841 pacid=23159976 polypeptide=Lus10022841 locus=Lus10022841.g ID=Lus10022841.BGIv1.0 annot-version=v1.0 MRPNCCHVSLAFLLKFFNFLQAFLGISIILYSVWMLDQWNHHLPVSPPPFPAPSSSSSSSVVLSRSHSITTTLDLASQMELSSLGVYFNSVDLPAPWFIY SFMGVGAIICCITFIGCIAAEAIHGCCLCFYTVLKVLLILLEAALIAFIAIDRHWEKDIPFDPTGEVQSIRAFIEDNIEICKWVGITVVVVQAVSLLLAM VLRGLVATPKSDIDGEDDYETGRSRRWEPLLGQPGQTSGSGTGSDIWSSRMREKYGLNGNENPAMKSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20230			Tetraspanin family protein (.1...		Lus10022841 [exp]	0	1
AT5G01830			ARM repeat superfamily protein...		Lus10025244 [exp]	2.2	0.8791
AT5G17165			unknown protein		Lus10002135 [exp]	3.0	0.8772
AT2G20230			Tetraspanin family protein (.1...		Lus10011910 [exp]	3.7	0.8338
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	3.7	0.8773
AT2G39705		RTFL8, DVL11	DEVIL 11, ROTUNDIFOLIA like 8 ...		Lus10002705 [exp]	3.7	0.8466
AT5G14890			NHL domain-containing protein ...		Lus10033413 [exp]	4.0	0.8545
AT5G65660			hydroxyproline-rich glycoprote...		Lus10002158 [exp]	4.5	0.8528
AT3G24535			unknown protein		Lus10023639 [exp]	5.7	0.8453
					Lus10017454 [exp]	6.9	0.8350
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10001719 [exp]	10.0	0.8409

Compare expression of checked genes

Lus10022841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.