Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28760 125 / 4e-32 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G20240 120 / 2e-30 Protein of unknown function (DUF3741) (.1) AT5G43880 99 / 4e-23 Protein of unknown function (DUF3741) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011911 [exp] 363 / 6e-121 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253600 [exp] 162 / 6e-45 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G194600 [exp] 159 / 1e-43 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022842 pacid=23159923 polypeptide=Lus10022842 locus=Lus10022842.g ID=Lus10022842.BGIv1.0 annot-version=v1.0 ATGGAAGAGTGTTGCTCTTCAAGTTTGGATGCTTCTCATGAGGGAGTGTTGACAGTTGCAAAGCCAGAAATGGAAAGGAATACAAGTGAGAACCAAGATC AGCCAAGCCCAATCTCGGTTTTGGAAGCGCCATTCGAAGAGGATGACATCAATATCACAGAGCTTTGCGCTAGTATAAAGCTAGACCGCCGCGGGCCGGA GTTACTCTCAAAGTCTAACTTAATCGACAAGTTACCGCCCATCGGATCAATCTCTAGGACACTCTCCTGGGACGATACCTCTTGCAGCACAGACACATCG TCCTCTTCTTACCCACTAAAGCCCTCTCTGACCTCCTCGAGCGCCGAGGAGGAAGAAAGGGACATACTTTCCTTCATGGACACGCTACTATCAGCAGCTG GCTTGCAAGACTCGTCGGTTTCACCAAGATGGCATTCACCGGACAGCCCATTAGACCCGTCGCTGAGAGACAAGCTTGCCAGCCAAGAAGTAGATAATGA AATTATTGCAAAGAGGAGACAGATAAGATCAACTAGGAAGCTCTTGTTTGACTGTCTGAACGTGGCACTCCTAGACATGATCACATCATCAACAAGCACC AGTAATAGTGGTGGGCCCACCGTCACGGTGAAGGAGAGGGTGGTGGGGCAAATGAGGGAGTGGGTTTGGAGGAGGAAGGAGGAGGAGGAGGAGGCGGCAG AGGACGAAGGGTCGAGTGTGGTGGTAGAGAGAGTGGTGAGGAAGGAGGTGGCGGCGGTGGGGAAAGTGTGGACGAATGAGGTGGCAGCGGCGGTGGAAAG TTTAGGGAAGGAAATAGAAGGGAAGTTACTAGAAGAGCTGGTGGAGGAGGCGGTGGTTGATTTGACCGGCGGTAGGGCGGAGGTGATGCTATGA
AA sequence Show only first row Show all	>Lus10022842 pacid=23159923 polypeptide=Lus10022842 locus=Lus10022842.g ID=Lus10022842.BGIv1.0 annot-version=v1.0 MEECCSSSLDASHEGVLTVAKPEMERNTSENQDQPSPISVLEAPFEEDDINITELCASIKLDRRGPELLSKSNLIDKLPPIGSISRTLSWDDTSCSTDTS SSSYPLKPSLTSSSAEEEERDILSFMDTLLSAAGLQDSSVSPRWHSPDSPLDPSLRDKLASQEVDNEIIAKRRQIRSTRKLLFDCLNVALLDMITSSTST SNSGGPTVTVKERVVGQMREWVWRRKEEEEEAAEDEGSSVVVERVVRKEVAAVGKVWTNEVAAAVESLGKEIEGKLLEELVEEAVVDLTGGRAEVML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28760			Protein of unknown function (D...		Lus10022842 [exp]	0	1
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	1.0	0.8514
AT3G26935			DHHC-type zinc finger family p...		Lus10032009 [exp]	2.8	0.8075
AT1G65295			unknown protein		Lus10026997 [exp]	3.0	0.8042
AT1G09310			Protein of unknown function, D...		Lus10018630 [exp]	6.9	0.7902
AT3G18050			unknown protein		Lus10027253 [exp]	8.8	0.7900
AT2G35760			Uncharacterised protein family...		Lus10038800 [exp]	8.9	0.7764
AT3G26935			DHHC-type zinc finger family p...		Lus10035177 [exp]	10.5	0.7934
AT5G51010			Rubredoxin-like superfamily pr...		Lus10022430 [exp]	13.5	0.7652
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	16.2	0.7747
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	23.2	0.7641

Compare expression of checked genes

Lus10022842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.