Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28760 340 / 1e-105 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT2G20240 248 / 4e-73 Protein of unknown function (DUF3741) (.1) AT5G43880 247 / 7e-72 Protein of unknown function (DUF3741) (.1) AT3G53540 151 / 4e-38 unknown protein AT1G63670 45 / 0.0002 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011911 [exp] 579 / 0 AT4G28760 535 / 9e-179 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10025296 [exp] 128 / 2e-30 AT3G53540 456 / 7e-146 unknown protein Lus10024434 [exp] 110 / 8e-25 AT3G53540 449 / 2e-144 unknown protein Lus10011912 [exp] 101 / 4e-11 AT4G28760 141 / 2e-39 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10002008 [exp] 65 / 1e-10 AT1G63670 100 / 2e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Lus10035490 [exp] 61 / 3e-09 AT1G63670 100 / 1e-21 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G253600 [exp] 507 / 8e-169 AT4G28760 752 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.014G194600 [exp] 384 / 4e-123 AT4G28760 583 / 0.0 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.006G213700 [exp] 153 / 7e-39 AT3G53540 433 / 1e-136 unknown protein Potri.016G080200 [exp] 123 / 6e-29 AT3G53540 234 / 1e-64 unknown protein Potri.001G103400 [exp] 65 / 9e-11 AT2G45900 86 / 5e-17 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Potri.010G211700 [exp] 64 / 2e-10 AT2G39435 155 / 2e-40 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1.2) Potri.016G095500 [exp] 44 / 0.0004 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12552 [flax] [poplar] DUF3741 Protein of unknown function (DUF3741)
Representative CDS sequence Show only first row Show all	>Lus10022843 pacid=23160024 polypeptide=Lus10022843 locus=Lus10022843.g ID=Lus10022843.BGIv1.0 annot-version=v1.0 ATGAATCAGAGGCAAACAGTAGAGAGCAATTTCCCTGGATGTTTGGGGAGGATGGTGAATCTGTTCGATCTAGCCAATGGTGTCAGTGGGAACAACAGGC TGCTGACGAATAAACCGCATAATGGTAGGTATTTCCTATGGAATCTTTTAGTTTATGGTATGGAGCCAGCTGTGTTTGCTGACAGGGAGAGTAGTGGGGG GTTTGACAGGTTCTTCACTGGCAAGGAGTCAATCAGACGTTGTGAGGATGATGGGTGCACCTTTTGGAGATCAGATCGAGGACAAAATGGTAAAGAAAAG GGTGGATTGATTCCCTTATTTGTTTATTGTCATGATTCTGACTACAGATCAGTGTTACTGATATGTTGTCCTCATCTCCTTTCCTTGCTCTTTGTGCTGA ACGTGCAGATTGTGTCTGAGTTCCGGAGATGCTCCTCTAATAAAAAGGCAAGTGGGACGCCGATGAAGACCCTTATAGCTCAAGAGCTTAATAAAGAAGT AGAGAGCAAGCAAAAGCCATCGAATTTAGTAGCTAAGTTGATGGGTCTTGACGCTCTTCCGCATCAGCATCAGCAGCAACCTAACTCCGGTGGTGTACAG AAAAGTCACGCAAAGGGTTACTCGAGACGGTCTCTGAGTCATTCGGGTATACTAACGGGATGTTGGGAGCCTGATCGGGGTTTTTCAGACAAGGAAATCC AGTGTGGGGATTATGTATATGATGTATGGCAGCAGTCTCTCAGAGATGTCTCACCGCAGAAGAGAAGGGCTGATAGGAATATGAACGACAGAAAGATGGC TTTGATTCGGCAGAAATTCATGGAACTCAAATGTCTGGCTACTGATGAAAAGGGTCGTCAGTCCAAGGAATTTCAAGAAGCATTGGATATCTTGAGCTCC AACAGAGATCTATTGCTCAAGTTTTTCCAGGAGCCAAATTCAATGTTCTCTCAACATCTCTATGACATGCTGTCTATTCCTCCACCTCCAGAGACAAAGC GAATCACTGTTCTCAAACCGTCTACTAAGGTGACTGATAGTGATAAATCAGGAGGATTGGCGAAGAAGGGTGATAAAAAGGCCACGAATCTTGGATGGGG CAGCAATGACCTTGGACATTCTCCAACTTTTCCCGGTGATGAATATTCTTCCCAACCAACGAGGATAGTAGTGTTAAAGCCTAGCCCGGCAAGGACTTTT GATATCAAAGCTGTGGTCTCTCCACCATTGTCAACGCCGACAGCTGGACAGGGTGAAGAGCTTTGTGATGAAGCTGATGATCACGAGGCACAAGAATCAA AAGAGGTGGCAAGCGAGATCACAAGGCAAGTGCGGGAAAATCTGATGGGTCAGGGGAGGGATGAACCATTCTTGTCCTCCGTGTTTTCAAACGGATACAT CTGTGATGACAGTTCATTCAACAAATCGGAAGCTGAGTCCGAAAATGGAAACCTTAGCGATTCAGAGATTGCATCTCCTACTTCAAGACACTCATGGGAC TATATCAATAGGTTTGGCAGTCCATTCTCTTCGGCATCCTTCAGTCGTGCATCTTGCTCCCCAGAGTCATCTGTTTGCAGGGAAGCAAAGAAGAGGCTAT CGGAAAGATGGGCCATGATGGCCTCAAATATGAATTCTCAGGAGCAGAACAATGATGCTCGAAAAAGCTCTAGCACTTTGGGTGAGATGCTGGCTCTCTC TGATGGGAAGAAGCCGGTGGTGTCTGAGCAACGGGCGTTTCCGGCTTATTTTTCTCGAAAAACAAGAAATCGAAAGATAAAAACAGTGCATCTCTATCTC AAGCTGACTGCCAATCCGTCACCTCAGAAGCACCAGGATCAATAG
AA sequence Show only first row Show all	>Lus10022843 pacid=23160024 polypeptide=Lus10022843 locus=Lus10022843.g ID=Lus10022843.BGIv1.0 annot-version=v1.0 MNQRQTVESNFPGCLGRMVNLFDLANGVSGNNRLLTNKPHNGRYFLWNLLVYGMEPAVFADRESSGGFDRFFTGKESIRRCEDDGCTFWRSDRGQNGKEK GGLIPLFVYCHDSDYRSVLLICCPHLLSLLFVLNVQIVSEFRRCSSNKKASGTPMKTLIAQELNKEVESKQKPSNLVAKLMGLDALPHQHQQQPNSGGVQ KSHAKGYSRRSLSHSGILTGCWEPDRGFSDKEIQCGDYVYDVWQQSLRDVSPQKRRADRNMNDRKMALIRQKFMELKCLATDEKGRQSKEFQEALDILSS NRDLLLKFFQEPNSMFSQHLYDMLSIPPPPETKRITVLKPSTKVTDSDKSGGLAKKGDKKATNLGWGSNDLGHSPTFPGDEYSSQPTRIVVLKPSPARTF DIKAVVSPPLSTPTAGQGEELCDEADDHEAQESKEVASEITRQVRENLMGQGRDEPFLSSVFSNGYICDDSSFNKSEAESENGNLSDSEIASPTSRHSWD YINRFGSPFSSASFSRASCSPESSVCREAKKRLSERWAMMASNMNSQEQNNDARKSSSTLGEMLALSDGKKPVVSEQRAFPAYFSRKTRNRKIKTVHLYL KLTANPSPQKHQDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28760			Protein of unknown function (D...		Lus10022843 [exp]	0	1
AT4G28760			Protein of unknown function (D...		Lus10011912 [exp]	1.0	0.9507
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016684 [exp]	5.3	0.8916
AT5G07940			unknown protein		Lus10034693 [exp]	7.7	0.8249
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Lus10010071 [exp]	11.2	0.8454
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	15.7	0.8781
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	17.1	0.8707
AT3G51650			unknown protein		Lus10009098 [exp]	17.5	0.8647
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	20.0	0.8817
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10006161 [exp]	24.7	0.8557
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10010562 [exp]	27.6	0.8728

Compare expression of checked genes

Lus10022843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.