Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28730 176 / 1e-56 GrxC5 glutaredoxin C5, Glutaredoxin family protein (.1) AT2G20270 166 / 9e-53 Thioredoxin superfamily protein (.1.2) AT5G63030 95 / 3e-25 GRXC1 glutaredoxin C1, Thioredoxin superfamily protein (.1) AT5G40370 89 / 3e-23 GRXC2 glutaredoxin C2, Glutaredoxin family protein (.1.2) AT5G20500 85 / 3e-21 Glutaredoxin family protein (.1) AT5G18600 78 / 4e-19 Thioredoxin superfamily protein (.1) AT1G77370 76 / 5e-18 Glutaredoxin family protein (.1) AT4G15700 73 / 3e-17 Thioredoxin superfamily protein (.1) AT4G15690 71 / 3e-16 Thioredoxin superfamily protein (.1) AT3G21460 71 / 4e-16 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011915 [exp] 302 / 2e-106 AT4G28730 154 / 4e-48 glutaredoxin C5, Glutaredoxin family protein (.1) Lus10022253 [exp] 100 / 8e-28 AT5G40370 162 / 2e-53 glutaredoxin C2, Glutaredoxin family protein (.1.2) Lus10013089 [exp] 100 / 2e-27 AT5G40370 162 / 2e-53 glutaredoxin C2, Glutaredoxin family protein (.1.2) Lus10001237 [exp] 91 / 1e-23 AT5G63030 171 / 2e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10021590 [exp] 91 / 2e-23 AT5G20500 180 / 1e-59 Glutaredoxin family protein (.1) Lus10017148 [exp] 90 / 4e-23 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1) Lus10042104 [exp] 87 / 2e-22 AT5G63030 177 / 1e-58 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10028355 [exp] 82 / 5e-20 AT1G77370 171 / 2e-56 Glutaredoxin family protein (.1) Lus10033965 [exp] 77 / 2e-18 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G254100 [exp] 182 / 5e-59 AT4G28730 176 / 2e-56 glutaredoxin C5, Glutaredoxin family protein (.1) Potri.015G078900 [exp] 89 / 5e-23 AT5G63030 171 / 3e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.018G133400 [exp] 89 / 9e-23 AT5G20500 182 / 2e-60 Glutaredoxin family protein (.1) Potri.012G082800 [exp] 88 / 1e-22 AT5G63030 155 / 6e-50 glutaredoxin C1, Thioredoxin superfamily protein (.1) Potri.001G347700 [exp] 85 / 1e-21 AT5G40370 158 / 1e-51 glutaredoxin C2, Glutaredoxin family protein (.1.2) Potri.007G017300 [exp] 75 / 2e-17 AT1G77370 163 / 8e-53 Glutaredoxin family protein (.1) Potri.002G208700 [exp] 74 / 2e-17 AT3G62930 157 / 1e-51 Thioredoxin superfamily protein (.1) Potri.014G134000 [exp] 72 / 9e-17 AT3G62930 158 / 8e-52 Thioredoxin superfamily protein (.1) Potri.008G214800 [exp] 69 / 9e-16 AT5G18600 157 / 2e-51 Thioredoxin superfamily protein (.1) Potri.008G214500 [exp] 69 / 1e-15 AT3G21460 177 / 2e-59 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10022844 pacid=23159918 polypeptide=Lus10022844 locus=Lus10022844.g ID=Lus10022844.BGIv1.0 annot-version=v1.0 ATGGCGACTGCATCTCATTTCGTCAATCTCACCTCTCGGCCTCTCAAATCCTGCCTCCCGCCATCCCTCGCCACTCTCCCCATCACCTCTTTCCCCCTCA ACCACAGCCGCCGCCGCGCTCTTCTCACAGCCTCCGTCAATGTCTCCACAAACACACATCGACCCATCACCGTGGTCCGAGCCATGTCCGATTCTTCAGA TTCTTCCTCTTCCTTCGGTGCCAGGCTCGAAGAGACCGTGAAGAGGACCGTGGCCGAGAACCCAGTCGTGGTTTACTCCAAGTCTTGGTGCTCGTACTCG TCTGAGGTGAAAGGATTGTTCAAGAAGCTTGGAGTAGAGCCGTTGGTTATCGAATTGGATGAGCTTGGTGCGCAAGGGCCGCAGTTGCAGAAGATACTGG AAAGGGTTACAGGCCAACACACTGTTCCTAATGTGTTTATAGGGGGTAATCACATTGGTGGTTGCACAGATACTTTGAAGCTCAACAGGAATGGCGAACT CCAGTCTTTGCTCGAAAAGGCCAATGCCAAAGCCAGGCAGAGTTAG
AA sequence Show only first row Show all	>Lus10022844 pacid=23159918 polypeptide=Lus10022844 locus=Lus10022844.g ID=Lus10022844.BGIv1.0 annot-version=v1.0 MATASHFVNLTSRPLKSCLPPSLATLPITSFPLNHSRRRALLTASVNVSTNTHRPITVVRAMSDSSDSSSSFGARLEETVKRTVAENPVVVYSKSWCSYS SEVKGLFKKLGVEPLVIELDELGAQGPQLQKILERVTGQHTVPNVFIGGNHIGGCTDTLKLNRNGELQSLLEKANAKARQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28730		GrxC5	glutaredoxin C5, Glutaredoxin ...		Lus10022844 [exp]	0	1
AT4G26670			Mitochondrial import inner mem...		Lus10043170 [exp]	1.4	0.9349
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	5.2	0.9079
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10016155 [exp]	6.3	0.8782
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10000117 [exp]	6.7	0.8973
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10040130 [exp]	9.2	0.9077
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	14.0	0.8976
AT5G35530			Ribosomal protein S3 family pr...		Lus10030502 [exp]	15.4	0.9138
AT3G53630			unknown protein		Lus10023752 [exp]	16.6	0.9057
AT3G53630			unknown protein		Lus10003983 [exp]	16.7	0.9049
AT5G43790			Pentatricopeptide repeat (PPR)...		Lus10039388 [exp]	17.1	0.8912

Compare expression of checked genes

Lus10022844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.